RetrogeneDB ID: retro_mluc_349

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430142:662275..664606(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024234
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CUL1
• Ensembl ID: ENSMLUG00000002479
• Aliases: None
• Description: None

Sequence

>retro_mluc_349
ATGTCATCGAACAGGAGTCAGAATCCCCATGGACTGAAGCAGATTGGCCTTGACCAGATCTGGGATGACCTCAGAGCCGG
AATCCAGCAGGTATACACCAGACAGAGTATGGCAAAATCCAGATACATGGAGCTCTACACTCATGTTTATAGCTACTGCA
CGAGTGTTCACCAGTCAAACCAAACGCAAGGGGCTGGCGTCCCTCCTTCTAAATCAGAAAAGGGGCAAACGCCTGGGGGA
GTGCAACTTCTTGGCTGGGAATTATACAAACGACTTAAAGAATTTTTGAAGAATTATTTGACAAATCTTCTTAAGGATGG
AGAAGACTTGATGGATGAGAGTGTACTGAAGTTCTACACTCAGCAGTGGGAAGATTACCGGTTTTCCAGCAAAGTTCTGA
ATGGAATTTGTGCCTACCTCAATAGATATTGGGTTCGCCGTGAATGTGATGAAGGACAAAAAGGAATATATGAAATCTAT
TCTCTTGCATTGGTGACTTGGAGAGATTGTCTATTCAGGCCCTTGAACAAACAGGTAACTAATGCTGCTTTAAAACTGAT
TGAAAAGGAAAGAAATGGTGAAACCATCAATACAAGACTGATTAGTGGAGCTGTACAGTCTTATGTGGAATTGGGGCTGA
ATGAAGATGATGCATTTGCGGAGGGTCCTACGTTAACAGTGTATAAAGAATCCTTTGAGTCTCAGTTTTTGGCTGATACA
GAGAGATTTTATACCAGAGAGAGTACTGAATTCTTGCAGCAGAACCCAGTTACTGACTACATGAAAAAGGCAGAGGCCCG
TCTGCTCAAGGAGCAACAAAGAGTGCAGGTCTACCTCCACGAAAGCACTCAGGACGAGCTAGCGAGGAAGTGCGAGCAGG
TGCTCATCGAGAAGCACCTGGAGATTTTTCACACAGAGTTTCAGAACTTGCTGGATGCTGATAAAAACGAAGATTTGGGT
CGCATGTATAATCTTGTATCTCGAATCCAGGACGGCCTAGGAGAACTGAAAAAACTTTTGGAGACACATATTCATAATCA
GGGTCTTGCAGCAATTGAAAAGTGTGGAGAAGCTACTTTAAATGATCCCAAAATGTACGTGCAGACAGTGCTGGATGTTC
ATAAAAAGTACAATGCCCTAGTCATGTCAGCATTCAATAACAACGCGGGCTTCGTGGCCGCCCTGGACAAGGCTTGTGGG
CGCTTCATAAACAACAATGCTGTCACCAAGATGGCTCAGTCGTCCAGTAAGTCCCCCGAATTGCTGGCTCGATACTGTGA
CTCCTTGTTGAAGAAGAGTTCCAAGAACCCAGAAGAAGCAGAAATAGAAGATACACTCAATCAAGTGATGGTTGTCTTCA
AGTACATAGAGGACAAGGATGTGTTCCAGAAGTTCTATGCGAAGATGCTGGCCAAAAGACTCGTGCACCAGAACAGTGCG
AGTGATGATGCCGAAGCAAGCATGATCTCCAAATTAAAGCAAGCATGTGGGTTTGAGTATACCTCTAAACTTCAGCGGAT
GTTTCAGGACATTGGCGTGAGCAAAGATTTAAACGAACAGTTCAAAAAGCACCTGACAAATTCAGAGCCACTGGACTTGG
ACTTCAGTGTCCAGGTGCCGAGCTCCGGCTCGTGGCCCTTCCAGCAGTCCTGCACGTTCGCCTTGCCATCAGAGCTGGAA
CGTAGCTACCAGCGATTCACTGCTTTCTACGCTAGTCATCATAGCGGCAGGAAGCTGACGTGGTTGTACCAACTCTCCAA
AGGAGAGCTGGTCACAAACTGCTTCAAGCGCAGATACACTTTGCAGGCATCTACATTCCAGATGGCAATCCTGCTTCAAT
ACAACACGGAAGATGCTTACGCGGTGCAGCAGCTGACGGACAGCACTCAAATAAAAATGGACATTTTGGCACAAGTCCTA
CAGATTTTATTGAAGTCGAAGTTATTGGTCTTGGAAGATGAAAATGCAAATGTTGATGAGGTGGAATTGAAGCCAGATAC
CTTAATAAAATTATATCTTGGTTATAAAAATAAGAAAGTAAGGGTTAACATCAATATGCCAATGAAAACCGAACAGAAGC
AGGAACAGGAAACTACACACAAAAATATTGAAGAGGACCGGAAACTGCTGATCCAGGCGGCGATTGTGAGGATCATGAAG
ATGCGGAAGGTCCTGAAGCACCAGCAGCTGCTTGGGGAGGTGCTCACTCAGCTGTCCTCACGGTTCAAGCCACGGGTCCC
GGTCATCAAGAAATGCATTGATATTCTGATCGAGAAAGAATATTTGGAGCGAGTTGATGGTGAAAAGGACACCTACAGTT
ACTTGGCTTAA

Alignment

ORF - retro_mluc_349 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.78 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQTRGAGVPPS
          MSSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVY.YCTSVHQSNQT.GAGVPPS
Retrocopy MSSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYSYCTSVHQSNQTQGAGVPPS

Parental  KSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYL
          KS.KGQTPGG.Q..G.ELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYL
Retrocopy KSEKGQTPGGVQLLGWELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYL

Parental  NRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVE
          NR.WVRRECDEG.KGIYEIYSLALVTWRDCLFRPLNKQVTNA.LKLIEKERNGETINTRLISG.VQSYVE
Retrocopy NRYWVRRECDEGQKGIYEIYSLALVTWRDCLFRPLNKQVTNAALKLIEKERNGETINTRLISGAVQSYVE

Parental  LGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLH
          LGLNEDDAFA.GPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVT.YMKKAEARLL.EQ.RVQVYLH
Retrocopy LGLNEDDAFAEGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTDYMKKAEARLLKEQQRVQVYLH

Parental  ESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLA
          ESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLA
Retrocopy ESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLA

Parental  AIEKCGEAALNKDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSP
          AIEKCGEA.LN.DPKMYVQTVLDVHKKYNALVMSAFNN.AGFVAALDKACGRFINNNAVTKMAQSSSKSP
Retrocopy AIEKCGEATLN-DPKMYVQTVLDVHKKYNALVMSAFNNNAGFVAALDKACGRFINNNAVTKMAQSSSKSP

Parental  ELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMI
          ELLARYCDSLLKKSSKNPEEAE.EDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMI
Retrocopy ELLARYCDSLLKKSSKNPEEAEIEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMI

Parental  SKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPSEL
          SKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFS.QV.SSGSWPFQQSCTFALPSEL
Retrocopy SKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSVQVPSSGSWPFQQSCTFALPSEL

Parental  ERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYAVQQLTDST
          ERSYQRFTAFYAS.HSGRKLTWLYQLSKGELVTNCFK.RYTLQASTFQMAILLQYNTEDAYAVQQLTDST
Retrocopy ERSYQRFTAFYASHHSGRKLTWLYQLSKGELVTNCFKRRYTLQASTFQMAILLQYNTEDAYAVQQLTDST

Parental  QIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETT
          QIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKK.RVNIN.PMKTEQKQEQETT
Retrocopy QIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKVRVNINMPMKTEQKQEQETT

Parental  HKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEK
          HKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEK
Retrocopy HKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEK

Parental  DTYSYLA
          DTYSYLA
Retrocopy DTYSYLA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_349 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000008736	1 retrocopy	retro_btau_32,
Myotis lucifugus	ENSMLUG00000002479	1 retrocopy	retro_mluc_349 ,
Otolemur garnettii	ENSOGAG00000014715	1 retrocopy	retro_ogar_3491,