RetrogeneDB ID: retro_mluc_347

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429931:765804..766920(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024388
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: LIASA
• Ensembl ID: ENSMLUG00000004602
• Aliases: None
• Description: Lipoyl synthase, mitochondrial A [Source:UniProtKB/TrEMBL;Acc:G1P2T3]

Sequence

>retro_mluc_347
ATGTCTCTACGCTGTGGGGTAGTCGTCCGCGCCATGAGACCCCAAGTATTTGGAAAATATTTATGCAGTCCAGTCAGAGC
GGTAAGTTCCTTGCCAGATAAAAAAAAAGGGGGATTTTTACAGACTGGACCAGACCTTCGAGATTTTGTGTCTCGTGATC
TTGCAGACAAGAGCACCTGGGATGAATATAAAAGGAACTTAAAACGCCAGAAAGGAGAGAGGTTAAGACTACCTCCATGG
CTAAAGACAAGGATTCCCATGGGGAGAAATTACAGTAAACTGAAAAACACTTTGAGGAATTTAAATCTCCATACAGTGTG
TGAGGAAGCTCGATGCCCCAATATCGGAGAGTGCTGGGGAGGTGGGAAATATGCCACTGCCACAGCCAGGATCATGCTGA
TGGGCGACACGTGTACAAGAGGTTGCCGGTTTTGTTCTGTTAAGACGGCAAGAAACCCGCCTCCCGTAGACGTCAACGAG
CCCTGCAATACCACCAAGGCCATTGCCGAGTGGCGTCTGGATTATGTCGTCCTGACATCGGTGGGCCGAGATGATGTGAC
CGATGGAGGAGCTGAGCACTTTGCAAAGACTGTATCTTACCTAAAGGAAAGGAACCCAAAAATCCTTGTGGAATGCCTCA
CTCCTGATTTCCGGGGAGATCTTAAAGCAATAGAAAAAGTCGCCCTGTCGGGATTAGATGTATTTGCACATCATGTAGAA
ACAGTCCCGGAATTACAGAGGAAAGTTCGTGATCCCAGGGCCAATTTCGACCAGTCTCTGCCCGTCCTGAAGCATGCCAA
GGAGATTCAGCCTGATGTTATTTCTAAAACATCAATCATGTTGGGGCTAGACGAGGATGATGAGCAAGTATATGCAACAA
TGAAATTACTCCGTGAGGCCGATGTGGATTGTTTGACTTTAGGACAGTATATGCAGCCCACAAAGAGCAGTCTCAAGGTT
GAAGAATACATTACTCCTAAAAAGTTCAAATACTGGGAAAGGGTAGGAAATGAACTTGGATTTCATTATACTGCAAGTGG
CCCTCTGGTGCGTTCTTCATATAAAGCGGGTGAATTTTTCCTGAAAAATTTAGTGGCTAAAAGAAAAACAAAAGCC

Alignment

ORF - retro_mluc_347 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.59 %
• Parental protein coverage: 99.73 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSLRCGVVVRIVRPQVFGKYLCSPVRAVSSLPDKKKE-FLKNGPDLQDFVSGDLADKSNWDEYKGNLKRQ
          MSLRCGVVVR..RPQVFGKYLCSPVRAVSSLPDKKK..FL..GPDL.DFVS.DLADKS.WDEYK.NLKRQ
Retrocopy MSLRCGVVVRAMRPQVFGKYLCSPVRAVSSLPDKKKGGFLQTGPDLRDFVSRDLADKSTWDEYKRNLKRQ

Parental  KGERLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTR
          KGERLRLPPWLKT.IPMG.NY.KLKNTLRNLNLHTVCEEARCPNIGECWGGG.YATATA.IMLMGDTCTR
Retrocopy KGERLRLPPWLKTRIPMGRNYSKLKNTLRNLNLHTVCEEARCPNIGECWGGGKYATATARIMLMGDTCTR

Parental  GCRFCSVKTARKPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDLPDGGAEHFAKTVSYLKERNPKILV
          GCRFCSVKTAR.PPP.D.NEP.NT.KAIAEW.LDYVVLTSV.RDD..DGGAEHFAKTVSYLKERNPKILV
Retrocopy GCRFCSVKTARNPPPVDVNEPCNTTKAIAEWRLDYVVLTSVGRDDVTDGGAEHFAKTVSYLKERNPKILV

Parental  ECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLKHAKEVQPDVISKTSIM
          ECLTPDFRGDLKAIEKVALSGLDV.AH.VETVPELQRKVRDPRANFDQSL.VLKHAKE.QPDVISKTSIM
Retrocopy ECLTPDFRGDLKAIEKVALSGLDVFAHHVETVPELQRKVRDPRANFDQSLPVLKHAKEIQPDVISKTSIM

Parental  LGLGEDDEQVYATMKALREADVDCLTLGQYMQPTKRHLKVEEYITPEKFKYWEKVGNDLGFHYTASGPLV
          LGL.EDDEQVYATMK.LREADVDCLTLGQYMQPTK..LKVEEYITP.KFKYWE.VGN.LGFHYTASGPLV
Retrocopy LGLDEDDEQVYATMKLLREADVDCLTLGQYMQPTKSSLKVEEYITPKKFKYWERVGNELGFHYTASGPLV

Parental  RSSYKAGEFFLKNLVAKRKTKA
          RSSYKAGEFFLKNLVAKRKTKA
Retrocopy RSSYKAGEFFLKNLVAKRKTKA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_347 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000012946	2 retrocopies	retro_chof_1942, retro_chof_2555,
Dasypus novemcinctus	ENSDNOG00000007417	1 retrocopy	retro_dnov_266,
Myotis lucifugus	ENSMLUG00000004602	2 retrocopies	retro_mluc_1985, retro_mluc_347 ,
Mus musculus	ENSMUSG00000029199	1 retrocopy	retro_mmus_3029,
Tursiops truncatus	ENSTTRG00000014293	1 retrocopy	retro_ttru_1371,