RetrogeneDB ID: retro_mluc_346

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429797:5128365..5129307(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023588
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000005953
• Aliases: None
• Description: None

Sequence

>retro_mluc_346
ATGGAGGCTGGTCGCTCAGCTGTACTCCGTGTGAAGCGGAAGCGCAGCGAGGAGCCTGCTGAGGCCCTGGTCCTCGCCTG
TAAACGCCTCCGGACAGATGCGGTGGAGTCGGCGGTCCAAAAGACGCCCCCCGAGGGTCTGGAGAAAGCAGCAGAGAAAA
ATGTCTTCCACATGGTGGCTACCGTGTGCTCCCAGGAGGACCCGGTCCAGCCGCTCCTGCGCGCTCTGCCAGGACCCCGG
GCCACCCCTCAGCGCATCCGCCACAAGCTCCGCACTTCCACTCGGAAGGTCCAGCAGGAGGGTCGCTACAGGGTAGTCTC
TAGCCGCCGACCCTCGGGCCTTCTCTCGGATGACCTGGAGTCCGAGGACGCGCGGGAGAACCCAGAAGCCGACCGTGAGG
CAGGCTTCCAGCTGATGGATCTGGTCCATGAAGAAGGAGACCCAGAGGCTGCTGCCGCAGCCGCCGCCTCCTCCTGCAAA
GTATCTGACCCAGATGTGACCCTTTGCAATGCTGTAGAGTTGCTCCGCGAGCGGTTGACTATATCTGAGGATGGGCCAAG
TGTCAGGCACCGGGAGGAACAGAAGGATGACTATGTGTATGACATTTACTACTCGGAGACGGCCCCTCCAGGATGGACTG
AGAATATCCTCTCTGTGCAGCCCTTCAGCCAGGAGTGGGAGCTGGTGCATGATGGCAAACAACTAGAGGACCTTGATGAA
GAGGAAGATGAAGATAATGAGAACAGTGAGAATAATTGGCGCAATGAGTACCCAGAGGAGGAGAGCAGTGATGGAGATGA
AGATTCCAGCGGCTCTGATGAATGGGACAGCCTCAGTGAAGAGGAAAGAGGCAATAGCAGACCACGGATGTGGGGCAAAT
ACCCTGTGGATGTGCAGAAGGAGTTTGGTTATGACAGCACTGATGACCTGGACTGGGACTGA

Alignment

ORF - retro_mluc_346 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.98 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEAGRTAILRVKRKRSEEPAEALVLACKRLRKDMVELAVQKTPPEGLEKAAEKNVFQLVATVCSQEDPVQ
          MEAGR.A.LRVKRKRSEEPAEALVLACKRLR.D.VE.AVQKTPPEGLEKAAEKNVF..VATVCSQEDPVQ
Retrocopy MEAGRSAVLRVKRKRSEEPAEALVLACKRLRTDAVESAVQKTPPEGLEKAAEKNVFHMVATVCSQEDPVQ

Parental  PLLRALPPPWGTHQRIRHDLRASTRKIQQEGRYRVVSSRRPSGLLSDDLESEDARENPEAGGDAGFQLLD
          PLLRALP.P..T.QRIRH.LR.STRK.QQEGRYRVVSSRRPSGLLSDDLESEDARENPEA...AGFQL.D
Retrocopy PLLRALPGPRATPQRIRHKLRTSTRKVQQEGRYRVVSSRRPSGLLSDDLESEDARENPEADREAGFQLMD

Parental  LVHEEGDPEAAATAC---LKVSDPDVILCNSVELIRERLTISEDGPSVGHREEQKDDYVYDIYYLETATP
          LVHEEGDPEAAA.A.....KVSDPDV.LCN.VEL.RERLTISEDGPSV.HREEQKDDYVYDIYY.ETA.P
Retrocopy LVHEEGDPEAAAAAAASSCKVSDPDVTLCNAVELLRERLTISEDGPSVRHREEQKDDYVYDIYYSETAPP

Parental  GWIENILSVQPLSQEWELVNDGKQLEDADEDEDEDDENSENNWRNEYP-EESSDGDEDSRGSDECNGLSE
          GW.ENILSVQP.SQEWELV.DGKQLED.DE.EDED.ENSENNWRNEYP.EESSDGDEDS.GSDE...LSE
Retrocopy GWTENILSVQPFSQEWELVHDGKQLEDLDEEEDEDNENSENNWRNEYPEEESSDGDEDSSGSDEWDSLSE

Parental  EERGNSRPQTWSKYPLDVQKEFGYDSTHDLDSD
          EERGNSRP..W.KYP.DVQKEFGYDST.DLD.D
Retrocopy EERGNSRPRMWGKYPVDVQKEFGYDSTDDLDWD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_346 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000007958	1 retrocopy	retro_amel_1808,
Macropus eugenii	ENSMEUG00000003614	6 retrocopies	retro_meug_1263, retro_meug_1647, retro_meug_1823, retro_meug_849, retro_meug_884, retro_meug_979,
Myotis lucifugus	ENSMLUG00000005953	1 retrocopy	retro_mluc_346 ,