RetrogeneDB ID: retro_mluc_317

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429871:2081822..2082731(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000001084
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000014835
• Aliases: None
• Description: None

Sequence

>retro_mluc_317
ACCATGTCGGTGGCCAAGGAGCTCTTACAGATGGACCTGTACTCGCTGCTAGGCATTGAGGAGAAGGCGGCAGTCAAAGA
GGTGAAGAAGGCATATAGGCAGAAGGCCCTCTCCTGCCATCCAGACAAAAATCCGGATAATCCCAGAGCAGCTGAACTCT
TCCACCAGCTTTCTCGGGCCTTGGAGGTACTGACTGATGCTGCAGCCAGGGCCGAGTATGACAAGATGAGGAAAGCCAAG
AAGCAGGCAGCAGAGAGGACCCAGAAACTAGATGAGAGAAGGAAGAAAGTGAAGCTTGACCTGGAGGCCCAGGAGCGGCA
GGCTCAGGCCCGCGCCCAGGAGGAGGAGGAGGAGAGCCGGAGCACCAGGACACTAGAGCAGGAGATCGAGCGCCTGCGAG
AAGAGGGTTCCCGGCAGCTGGAAAAACAGCAGAGGCTGATGCAGGAGCAGATACGCCAGGAACGGGAGCAGAGGTTGAGA
GGAAAGGCAGAACATCCTGAAGGCAAAGGAACTCCCAAGCTAAAGCTAAAATGGAAGTGCAGAGAGGATGGGTCAAAAGG
CGGCTACTCCAGAGATATCCTCCTGCAGCTTCTTCAAAAGTACGGAGAAGTGCTCAACCTGGTACTTTCCAGCAAGAAGG
CAGGCACCGCCGTGGTGGAGTTTGCGACCATCAAGGCTGCAGAGCTGGCTGTCCAGAATGAAGTGGGCCTGGTTGATAAT
CCTCTGAAGATTTCCTGGTTGGAGGGCCGGCCCCAGGGCAAGGACGGCCCCAGCCACCCAGGCCGGTCACAGGGCTTGGT
GGTGTCCGAGAGGGACTACGAAAGCCTCGTCATGATGCGCATGCGCCAAGCAGCTAAGCGGCAGCAGCTGATCGCCCAGA
TGCAGCAGGAGGACAAGGTGGGGCAGCTG

Alignment

ORF - retro_mluc_317 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.96 %
• Parental protein coverage: 99.64 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQALEVLTDAAARAAYDKIRKAKKQAAERTQKLDERRKK
          .VKKAYRQKALSCHPDKNPDNPRAAELFHQLS.ALEVLTDAAARA.YDK.RKAKKQAAERTQKLDERRKK
Retrocopy EVKKAYRQKALSCHPDKNPDNPRAAELFHQLSRALEVLTDAAARAEYDKMRKAKKQAAERTQKLDERRKK

Parental  VKLDLEARERQAQAQAQDEEEEESRSTRTLEQEIERLREEGSRQLEKQQRLMQEQIRQEREQRLRGKAEN
          VKLDLEA.ERQAQA.AQ.EEEEESRSTRTLEQEIERLREEGSRQLEKQQRLMQEQIRQEREQRLRGKAE.
Retrocopy VKLDLEAQERQAQARAQ-EEEEESRSTRTLEQEIERLREEGSRQLEKQQRLMQEQIRQEREQRLRGKAEH

Parental  PEGKGTPKLKLKWKCREDGSKGGYSRDVLLQLLQKYGEVLNLVLSSKKAGTAVVEFATIKAAELAVQNEV
          PEGKGTPKLKLKWKCREDGSKGGYSRD.LLQLLQKYGEVLNLVLSSKKAGTAVVEFATIKAAELAVQNEV
Retrocopy PEGKGTPKLKLKWKCREDGSKGGYSRDILLQLLQKYGEVLNLVLSSKKAGTAVVEFATIKAAELAVQNEV

Parental  GLVDNPLKISWLEGRPQGKDGPSHPGLSQGSVVSERDYESLVMMRLRQAAERQQLIAQMQQEDQVGQL
          GLVDNPLKISWLEGRPQGKDGPSHPG.SQG.VVSERDYESLVMMR.RQAA.RQQLIAQMQQED.VGQL
Retrocopy GLVDNPLKISWLEGRPQGKDGPSHPGRSQGLVVSERDYESLVMMRMRQAAKRQQLIAQMQQEDKVGQL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_317 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000020803	4 retrocopies	retro_cjac_1013, retro_cjac_4017, retro_cjac_738, retro_cjac_820,
Cavia porcellus	ENSCPOG00000014110	1 retrocopy	retro_cpor_693,
Homo sapiens	ENSG00000104129	2 retrocopies	retro_hsap_2363, retro_hsap_3468,
Gorilla gorilla	ENSGGOG00000000051	1 retrocopy	retro_ggor_2340,
Macropus eugenii	ENSMEUG00000005641	2 retrocopies	retro_meug_1387, retro_meug_2001,
Myotis lucifugus	ENSMLUG00000014835	1 retrocopy	retro_mluc_317 ,
Macaca mulatta	ENSMMUG00000013160	1 retrocopy	retro_mmul_1574,
Mus musculus	ENSMUSG00000034278	1 retrocopy	retro_mmus_3346,
Nomascus leucogenys	ENSNLEG00000003257	1 retrocopy	retro_nleu_343,
Pongo abelii	ENSPPYG00000006360	1 retrocopy	retro_pabe_2864,
Pan troglodytes	ENSPTRG00000006929	2 retrocopies	retro_ptro_1729, retro_ptro_2351,
Rattus norvegicus	ENSRNOG00000012368	2 retrocopies	retro_rnor_18, retro_rnor_2319,