RetrogeneDB ID: retro_mluc_311

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430083:511466..512333(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000007197
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000014336
• Aliases: None
• Description: None

Sequence

>retro_mluc_311
CCCTCCAGATCCAAGCTGGGCTCCATGGCTGAGCAGTTTAACTGCCACTACTGCAAGGCCTCCCTGCACGGGAAGAAGTA
CGTGGAGAAGGAGGACCACCACTGCTGCCTGGACTGCTATGACGAGCACTGCGCCAACACCTGCGTGGAATGCCACCAGA
CCATCGGTGCAGACGCCAAGGAGGTCCGCTATAAGGAAGGCTTCTGGCACGACACCTGCTTCCGCTGTTCCCAGTGCCAG
CACCCCTTAGCCACCGAGAGCTTTGTGGCCAAAGAGAACAAGGTCTTGTGCAAACAGTGCCACCTGCTTGAGAGCACCTA
CAAGTGCAAGGGCTGCTCACAGCCCATTATGCCAGGAGATCAGAACGTAGAGTACAAGGGGACCGTATGGCACCAAAACT
GCTTCGTCTGCAGCAACTGCAAGCAAGTCATCGGGACGAGTAGCTTCTTCCCTAAAGGGGAGGAATACTACTGCATGGCC
TGCTATGAGGAAAAGTTTGCCAAGCACTGCATGAAGTGCAAGAAGGCCATCACATCCGGAGGAATCACTTACCAGGACCA
GCCCTGGCATGCCGACTGCTTTGTGTGTGTCACCTGCTCAAAGAAGCTGGCCGGGCAGCGTTTCACTGCTGTGGAGGACC
AGTACTACTGCGTGGATTGCTACAAGAACTATGTGGCTAAGAAGTGTGCTGGATGCAAGAACCCCATCACTGGGTTTGGT
AAAGGCTCCAGTGTGGTGACCTATGAAGGACAGTCCTGGCACGACTACTGCTTCCACTGCAAAAAGTGCTCCCTGAATCT
GGCCAGCAAGCGCTTTGTCTTCCATCAGGAGCAAGTGTATTGCCCTGACTGTGCCAAAAAGCTGTAA

Alignment

ORF - retro_mluc_311 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.12 %
• Parental protein coverage: 97.3 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PSRYKVGTMAEKFDCHYCRDPLQGKKYVEKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRYWH
          PSR.K.G.MAE.F.CHYC...L.GKKYVEK..HHCCL.C.D..CANTCVEC...IGAD.KEV.YK...WH
Retrocopy PSRSKLGSMAEQFNCHYCKASLHGKKYVEKEDHHCCLDCYDEHCANTCVECHQTIGADAKEVRYKEGFWH

Parental  DTCFRCAKCLHPLANETFMSKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKGTVWHKDCFTCSNC
          DTCFRC..C.HPLA.E.F..K.NK.LC..C...E...KCKGC..PI..GDQNVEYKGTVWH..CF.CSNC
Retrocopy DTCFRCSQCQHPLATESFVAKENKVLCKQCHLLESTYKCKGCSQPIMPGDQNVEYKGTVWHQNCFVCSNC

Parental  KQVIGSGSFFPKGEDFYCVTCHESKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCSKKLAGQRFTA
          KQVIG..SFFPKGE..YC..C.E.KFAKHC.KC.KAITSGGITYQDQPWHA.CFVCVTCSKKLAGQRFTA
Retrocopy KQVIGTSSFFPKGEEYYCMACYEEKFAKHCMKCKKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTA

Parental  VEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEHVY
          VEDQYYCVDCYKN.VAKKCAGCKNPITGFGKGSSVV.YEGQSWHDYCFHCKKCS.NLA.KRFVFHQE.VY
Retrocopy VEDQYYCVDCYKNYVAKKCAGCKNPITGFGKGSSVVTYEGQSWHDYCFHCKKCSLNLASKRFVFHQEQVY

Parental  CPDCAKKL
          CPDCAKKL
Retrocopy CPDCAKKL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_311 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000015644	2 retrocopies	retro_dord_299, retro_dord_722,
Homo sapiens	ENSG00000022267	1 retrocopy	retro_hsap_2878,
Gorilla gorilla	ENSGGOG00000010054	1 retrocopy	retro_ggor_1994,
Microcebus murinus	ENSMICG00000009342	1 retrocopy	retro_mmur_1438,
Myotis lucifugus	ENSMLUG00000014336	2 retrocopies	retro_mluc_311 , retro_mluc_814,
Macaca mulatta	ENSMMUG00000007922	1 retrocopy	retro_mmul_1458,
Mus musculus	ENSMUSG00000023092	1 retrocopy	retro_mmus_51,
Nomascus leucogenys	ENSNLEG00000002560	1 retrocopy	retro_nleu_618,
Pongo abelii	ENSPPYG00000020761	1 retrocopy	retro_pabe_2382,
Rattus norvegicus	ENSRNOG00000000875	1 retrocopy	retro_rnor_2514,