RetrogeneDB ID: retro_mluc_302

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:18945109..18946192(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023153
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000005952
• Aliases: None
• Description: None

Sequence

>retro_mluc_302
CAAAATGGCGGCGGTGGCAGCTGGCTCGGCCCGGAGATGGTCTGCGGGCAGGTGTTCGACGTGGGGCCGTGCTACACCAA
CCTCTTGTACATTGGTGAGGGCGCCTATGGCACGGTGTGCTCTGCTTATGATAATGTCAACAAAGTTCTAGTAGCTATCA
AGAAAATCAGTCCTTTTGAGCACCAGACCTACTGCCAGAGAACCCTGAGGCAGATAAAAATCCTACCGCGCTTCAGACAC
GAGAACATCATTGGAATCAATGATATTATTCGAGCGCCAACCATCGAGCAAATGAAAGATGTATATATAGTACAGGACCT
CATGGAAACAGATCTCTACAAGCTCTTGAAGACACAACACCTCAGCAATGACCATATCTGCTATTTTCTTTACCAGATCC
TCAGAGGGTTAAAATATATCCATTCAGCTAACGTACTGCACTGTGACCTCAAACTTTCCAACCTGCTGCTCAACAACACC
TGTGATCTCAAGAACTGTGATTTTGGCTTGACCCGCGTTGCAGATCCAGACCATGATCACACAGGATTCCTGACAGAGTA
TGTAGCCACACATTGGTACAGGGCTCCAGAAATTATGTTGAATTCCAAGGGCTATACCAAGTCCATTGATATTTGGTCTG
TAGGCTGCATTCTGGCAGAGATGCTCTCCAACAGGTCCATCTCTCCAGGGAAGCATTACCTTGACCAGCTGAACCACATT
CTGGGTATTCTTGGATCCCCATCACAGGAAGACCTGAACTGCATAATCAACCTAAAAGCTAGAAACTATTTGCTTTCTCT
CCCACACAAAAATAAGGTGCCATGGAACAGGCTGTTCCCAAATGCCGATTCCAAAGCTCTGGATTTACTGGACAAAATGT
TGACCTTCAACCCTCACAAGAGGATTGAAGTAGAACAGGCGCTAGCCCACCCGTATCTGGAGCAGTATTATGACCCAAGT
GATGAGCCCATTGCTGGAGCACCATTCAAGTTTGACATGGAATTGGATGACTTGCCTAAGGAGAATCTCAAAGAACTAAT
TTTTGAAGAGACTGCTAAATTCCAGCCTGGATATAGATCTTAA

Alignment

ORF - retro_mluc_302 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.33 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDLVYIVQDLME
          SAYDNVNKV.VAIKKISPFEHQTYCQRTLR.IKIL.RFRHENIIGINDIIRAPTIEQMKD.VYIVQDLME
Retrocopy SAYDNVNKVLVAIKKISPFEHQTYCQRTLRQIKILPRFRHENIIGINDIIRAPTIEQMKD-VYIVQDLME

Parental  TDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHD
          TDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH.DLK.SNLLLN.TCDLK.CDFGL.RVADPDHD
Retrocopy TDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHCDLKLSNLLLNNTCDLKNCDFGLTRVADPDHD

Parental  HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQ
          HTGFLTEYVAT.WYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR.I.PGKHYLDQLNHILGILGSPSQ
Retrocopy HTGFLTEYVATHWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRSISPGKHYLDQLNHILGILGSPSQ

Parental  EDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDP
          EDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDP
Retrocopy EDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDP

Parental  SDEPIAEAPFKFDMELDDLPKEKLKELIFEETARFQPGYRS
          SDEPIA.APFKFDMELDDLPKE.LKELIFEETA.FQPGYRS
Retrocopy SDEPIAGAPFKFDMELDDLPKENLKELIFEETAKFQPGYRS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_302 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000010312	1 retrocopy	retro_btau_498,
Ficedula albicollis	ENSFALG00000007935	1 retrocopy	retro_falb_19,
Gallus gallus	ENSGALG00000001501	1 retrocopy	retro_ggal_20,
Myotis lucifugus	ENSMLUG00000005952	1 retrocopy	retro_mluc_302 ,
Myotis lucifugus	ENSMLUG00000011284	1 retrocopy	retro_mluc_1697,
Monodelphis domestica	ENSMODG00000017722	1 retrocopy	retro_mdom_101,
Ochotona princeps	ENSOPRG00000014484	2 retrocopies	retro_opri_242, retro_opri_615,