RetrogeneDB ID:

retro_mluc_299

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429919:746315..749042(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000003424
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000011438
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_299
ATGGCATCTGGGAAACCAACCCCTATGGACTCGCTCTCTTCCTGCCTCGCGCAGCTGACGGCGGCGGCCAGGGAGGGTCT
AGGTGGGACAAAGGACTCAGCCATCAACGAGACACCCTTGGGCCGTGCGCTCTTGGCTCTCCGCACGCGCCATGTCAAGG
CAGCGGGAGGAATTGAGCGCTTCCGGGCACGCGGCGGGCTCCACCCCCTTCTGGCGCTGCTACCACGAGCTTCGGTGGCT
GCAGCGTCGCCTGGCCCCGCCCCTTCGGCCGGCCCTGGCCCTTCGGCTGGCCCCGCCCCCTCCTCTGCACCCTTGTCGAC
CCTGGACTTGGTGCTTAGCATCCTAGCCGACTGCTGTACGGAAAGGGCGTGCCGGACTGAAGTGCGCAGACTCGGAGGCA
TTCTGTCTTTGGTGACTGTTCTGGAGTGTGTGAAGACAGACAGCATCCAGAACCGAGCAGCCCGTGCTCTGGGCAACTTA
GCCATGGAAGCTGAGAGCTGTGCGGACATCCATTCTGCTGGTGCTGTTCCCCTCCTCATTGAGAGCCTGACGGCCTACCA
CGACACACCTTGCTTGCAGAGCGTGATTCGCGCCCTCGGCAACCTGGCGGACTCCCCCCATCACCGCCTGGCCCTGGCAC
AGCAGGGAGCAGTGCGCCCACTGGTTGAGCTTCTGGCTGCTGCCCCGCACCCTGCGCTGACCTTGGCCCTAGTCCGTGCC
CTCCTAGAGCTGAGTCGAGGCTGCTCCCGTGCCTGTGCTGAGCAGCTAAGTCTGGGTGGAGGACTAGGCCCACTGGTCAG
TCTAGCCTCCCATCCCAGAAGGACAGTGCGCGAGTCAGCTATCCTGATCCTTGCCAACCTGTGTGCCCAGGGCCTGGTAC
GGCCTGCCCTGGGCAATGCTGGTGGTGTGGAGGTGCTGCTGGGTGAGCTCCAGCAACGCCGAGGTCCCGGTGGGGCGGGC
CCAGCCTCCCAGCAGCCCCTGGTGCAGGCTGTGTGCCTACTTTGCCGGGAGGCCATCAACCGAGCCCGGCTGCGGGATGC
TGGTGGTTTGGAGCTGCTGATGGGACTCTTGCGGGATCCTCATGCCAGCGCCTGGCACCCTTGTGTCGTGGCTGCCCTTG
AGCGCTTCCTCTATGATCCAGGGGCCCTGGGCCAACTGCAGGCTCTGGGGCTTGCACCTCTCTTGGCCGGGCAGCTGTGT
GGCGAGCTTGGTGATGAGGAAGAAGAGGGAAAAGAAGCTGCTTCCTGGGACTTTCCTGAGGAGGGGACCCCTGAGCAGGT
AGAAGCCAGAAGCTTCCGAAGCCTCAGGTCGTGGCTGATATCCGAGGGCTACGCCGCAGGCCCGGAAGACATCTCTCTGG
ACCGGTCTCCAGAGCGCTGTCCAGGGCCTCCTCCACAGCCTGCGCCCCCTGAGCAGGCCCAGGCAGCCAGTCCCGCCCGG
GGCCCAGCCTTGGTGCGGACGCCTCGAGGCCGCAGCCCTGCCACCAAGAAGTCTTGGGGCCGCGAGGTGCCAGCGCTGCT
GCTGCTTTCACACTTCTCCCAGGCGCCAGACCCCAGCGGGGCGCTGGTGACAGGCCCGGTCCTGGGCGGCCTGCTGGCCT
ACGTGACGAAGGCGCCAGGCCCACTGAGCCCGAGCGCACTGAACATCCTGGCGCGCCTCACCTGCAACCCTGCCTGCCTC
GAGGCCTTCGTGTGCAGCTATGGTGCCGCGCTGCTGCGAGCCTGGCTGGTGCTGGGTGTCGCCCCGGACGACTGGCCCAC
GCTGCGTGCCCGGCCCCCCTGTCAGCGCAGCGAGCACCGGGAGCTGGGTGAAATGCTGCTGCAGAACCTGACGGTGCAGG
CGGAGTCGCCCTTCGGAGTGGGGGTTCTCACTCACCTGCTGCTCTCCGGGAGTCCTGAGGACCGTGTGGCCTGTGCGCTG
ACCTTGCCCTTCATTTGTCGGAAGCCCTCTCTGTGGCGCCGGCTACTTCTGGACCAGGGCGGCCTCCGACTCCTCGTCTC
GGCGCTGACGCGGCCCGCCCCGCACCCACTCTTCCTCTTCTTTGCTGCAGACTCCCTTTCCTGCCTCCACAGCCTGGTGT
CTCCCACTGTGAGCCCAGCCCCGCCACCTGCAAGCCCCTTGGACCTAGACCCGCCCTCCCCTTGCCACTATGAACCTCTG
CTGGGCCCGGCTCCCATCCCAGCCCCCAATCTGCACTTCCTCCTGGACTCAGGCCTCCGGCTCCCCGCCCGGCGAGCCGC
CTCATCTACTGCCTCCCCTTTCTTCCGGGCCCTGCTAGCTGGCAGCTTTGCTGAAGCCCAGATGGATGTGGTACCTCTTC
CATACCTATCACCCAGCGCAGCCTGGCCTATCATGCATCACCTGCATGGCTGCCGCGGCTGTGGAGCAACCCTGGGGCCC
ATCCCCCCACCAGGCCAGCCCCTGCTGGGCTCAGAGGTGGAGGAGGCACTGGAGGCTGCTGACCGTTTCCTGCTGCGTGG
GCTGGAGGAGGAACTGGAAGAGGCTGTGGGCCGTATCCACCTGGGATCCCAAGGTGGCCCAGAGTCAGTGGGTGAGGTAT
TCCGCCTGGGCCGGCCTCGGCTGGCTGCCCACTGTGCACGCTGGATCCTGGGGCCGGGGCAGTGCCCACGGAAGCGGGCT
CTGGCCTTAGTGGGGCTGTTGGAGGCAGCAGGGGAGGAAGCAGGTCCCCTGACTGAGGCTTTGCTGGCTGTGGTGATGGG
AGTTTAA

ORF - retro_mluc_299 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.26 %
Parental protein coverage: 88.96 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalPSSIESAASDGPAPSPGPAPSSASLSTSSPPARLRKTLDLALSILADCCTEGACRAEVRRLGGILSLVTI
P.....AAS.GPAPS.GP.PS.A....SS.P.....TLDL.LSILADCCTE.ACR.EVRRLGGILSLVT.
RetrocopyPRASVAAASPGPAPSAGPGPS-AGPAPSSAPL---STLDLVLSILADCCTERACRTEVRRLGGILSLVTV
ParentalLQCVKTDSIQNRAARALGNLAMEAESCADIHSAGAVPLLIESLTAYQDSHCLQSVIRALRNLADSPQHRL
L.CVKTDSIQNRAARALGNLAMEAESCADIHSAGAVPLLIESLTAY.D..CLQSVIRAL.NLADSP.HRL
RetrocopyLECVKTDSIQNRAARALGNLAMEAESCADIHSAGAVPLLIESLTAYHDTPCLQSVIRALGNLADSPHHRL
ParentalALAQQGAVRPLAELLAAPPDPALTLALVRALLELSRGCSRACAEQLSLGGGLGPLVSLASHPKRTVRESA
ALAQQGAVRPL.ELLAA.P.PALTLALVRALLELSRGCSRACAEQLSLGGGLGPLVSLASHP.RTVRESA
RetrocopyALAQQGAVRPLVELLAAAPHPALTLALVRALLELSRGCSRACAEQLSLGGGLGPLVSLASHPRRTVRESA
ParentalILILANLCAQGLVRPALGNAGGVEVLLGELQQRRGPSGAGPASQQPLVRAVCLLCREAINRARLRDAGGL
ILILANLCAQGLVRPALGNAGGVEVLLGELQQRRGP.GAGPASQQPLV.AVCLLCREAINRARLRDAGGL
RetrocopyILILANLCAQGLVRPALGNAGGVEVLLGELQQRRGPGGAGPASQQPLVQAVCLLCREAINRARLRDAGGL
ParentalELLIGLLRDPHASAWHPRVVAALVGFLYDTGALGRLQALGLVPLLAGQLCGELGDEEEEGKEAASWDFPE
ELL.GLLRDPHASAWHP.VVAAL..FLYD.GALG.LQALGL.PLLAGQLCGELGDEEEEGKEAASWDFPE
RetrocopyELLMGLLRDPHASAWHPCVVAALERFLYDPGALGQLQALGLAPLLAGQLCGELGDEEEEGKEAASWDFPE
ParentalERTPERVEAGSFRSLRSWLISEGYAAGPEDISPDRSPERCPRPPPPPAPPEQAQAASPARSPALVRTPRG
E.TPE.VEA.SFRSLRSWLISEGYAAGPEDIS.DRSPERCP.PPP.PAPPEQAQAASPAR.PALVRTPRG
RetrocopyEGTPEQVEARSFRSLRSWLISEGYAAGPEDISLDRSPERCPGPPPQPAPPEQAQAASPARGPALVRTPRG
ParentalRSPATEESWGREGPALLLLSRFSQAQDPSGALVTGPALCGLLAYVTRAPGPPSPRALRILARLTCNPACL
RSPAT..SWGRE.PALLLLS.FSQA.DPSGALVTGP.L.GLLAYVT.APGP.SP.AL.ILARLTCNPACL
RetrocopyRSPATKKSWGREVPALLLLSHFSQAPDPSGALVTGPVLGGLLAYVTKAPGPLSPSALNILARLTCNPACL
ParentalEAFVCSYGAALLRAWLVLGVAPDDWPTLRARPPSLRSQHRELGEMLLQNLTVQAESPFGVGALTHLLLSG
EAFVCSYGAALLRAWLVLGVAPDDWPTLRARPP..RS.HRELGEMLLQNLTVQAESPFGVG.LTHLLLSG
RetrocopyEAFVCSYGAALLRAWLVLGVAPDDWPTLRARPPCQRSEHRELGEMLLQNLTVQAESPFGVGVLTHLLLSG
ParentalSPEDRVACALTLPFICRKPSLWRRLLLDQGGLRLLLSALTRPAPHPLFLFFAADSLSCLHSLVSPPVSPA
SPEDRVACALTLPFICRKPSLWRRLLLDQGGLRLL.SALTRPAPHPLFLFFAADSLSCLHSLVSP.VSPA
RetrocopySPEDRVACALTLPFICRKPSLWRRLLLDQGGLRLLVSALTRPAPHPLFLFFAADSLSCLHSLVSPTVSPA
ParentalPPPATPLDLDPPSPCHYEPLLGPAPIPAPDLHFLLDSGLRLPAQRAASSAASPFFRALLAGSFAEAQMDL
PPPA.PLDLDPPSPCHYEPLLGPAPIPAP.LHFLLDSGLRLPA.RAASS.ASPFFRALLAGSFAEAQMD.
RetrocopyPPPASPLDLDPPSPCHYEPLLGPAPIPAPNLHFLLDSGLRLPARRAASSTASPFFRALLAGSFAEAQMDV
ParentalVPLRDLSPSAAWPIMHHLHGCRGCGAALRPIPPPGQPLLGSEAEEALEAAGRFLLPGLEEELEEALGRIH
VPL..LSPSAAWPIMHHLHGCRGCGA.L.PIPPPGQPLLGSE.EEALEAA.RFLL.GLEEELEEA.GRIH
RetrocopyVPLPYLSPSAAWPIMHHLHGCRGCGATLGPIPPPGQPLLGSEVEEALEAADRFLLRGLEEELEEAVGRIH
ParentalLGSQGSLESMGEVLRLGRPRMAVHCARWVLGPGQCTRKRALALVELVEAAGEEAGPLTEAFLAVVMGV
LGSQG..ES.GEV.RLGRPR.A.HCARW.LGPGQC.RKRALALV.L.EAAGEEAGPLTEA.LAVVMGV
RetrocopyLGSQGGPESVGEVFRLGRPRLAAHCARWILGPGQCPRKRALALVGLLEAAGEEAGPLTEALLAVVMGV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_299 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Myotis lucifugus ENSMLUG00000011438 1 retrocopy
retro_mluc_299 ,




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