RetrogeneDB ID: retro_mluc_290

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430811:63728..64613(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026803
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012290
• Aliases: None
• Description: None

Sequence

>retro_mluc_290
ATGGCACATGGGATTCCTTCTCAAGGCAAAGTTACCATATCGGTGGATGAATACAGCTCTAACCCCACCCAGGCGTTCAC
GCACTACAACATCAACCAGAGCAGATTCCAGCCGCCACATGTACATATGGTCGACCCCATCCCATATGACACTCCAAAAC
CAGCGGGCCACATGCGGTTTGTCTGCATCTCAGACACACACTCCAGAACAGATGGTATCCAGATGCCTTATGGGGACATC
CTTCTCCACACAGGCGATTTCACCGAGCTGGGACTGCCCTCAGAGGTTAAGAAGTTTAATGACTGGTTAGGAAACCTGCC
ATATGAATATAAAATAGTGATTGCTGGGAATCATGAACTGACATTTGATAAGGAATTCATGGCAGACCTCGTTAAACAGG
ACTACTACCGTTTCCCCTCTGTGTCCAAATTGAAACCAGAGGACTTTGACAAAGTTCAGTCCCTCCTGACAAACAGTATT
TACTTACAAGACTCGGAGGTAACAGTGAAGGGATTCAGGATATACGGTGCACCTTGGACCCCGTGGTTTAATGGATGGGG
CTTTAACCTACCCAGAGGTCAGTCTCTGCTGGACAAATGGAACCTCATCCCCGAGGGCATCGACATTCTCATGACACATG
GACCTCCTCTAGGTTTTCGAGACTGGGTTCCAAAGGAGCTTCAGAGAGTGGGCTGCGTGGAGCTCTTAAACACAGTGCAG
AGGCGAGTCCGACCCAAGCTCCACGTGTTTGGTGGAATTCACGAAGGTTATGGCATCATGACCGACGGTTACACAACCTA
CATCAATGCCTCAACGTGTACAGTCAGCTTTCAACGGACCAACCCTCCAATTATATTTGACCTTCCAAACCCACAGAATT
CCTGA

Alignment

ORF - retro_mluc_290 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.8 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VDPIPYDTPKPAGHTRFVCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIV
          VDPIPYDTPKPAGH.RFVCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIV
Retrocopy VDPIPYDTPKPAGHMRFVCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIV

Parental  IAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWTPWF
          IAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFD.VQSLLTNSIYLQDSEVTVKGFRIYGAPWTPWF
Retrocopy IAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFDKVQSLLTNSIYLQDSEVTVKGFRIYGAPWTPWF

Parental  NGWGFNLPRGQSLLDKWNLIPEGIDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQRRVRPKLHVFGGI
          NGWGFNLPRGQSLLDKWNLIPEGIDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQRRVRPKLHVFGGI
Retrocopy NGWGFNLPRGQSLLDKWNLIPEGIDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQRRVRPKLHVFGGI

Parental  HEGYGIMTDGYTTYINASTCTVSFQPTNPPIIFDLPNPQNS
          HEGYGIMTDGYTTYINASTCTVSFQ.TNPPIIFDLPNPQNS
Retrocopy HEGYGIMTDGYTTYINASTCTVSFQRTNPPIIFDLPNPQNS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_290 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000012290	1 retrocopy	retro_mluc_290 ,
Tarsius syrichta	ENSTSYG00000004242	2 retrocopies	retro_tsyr_1719, retro_tsyr_940,