RetrogeneDB ID: retro_mluc_287

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429840:4614276..4615800(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000004562
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000016298
• Aliases: None
• Description: None

Sequence

>retro_mluc_287
ATGCTGCGCGTGGTGAGCTGGAACATTAATGGGATCCGGAGCCCTCTGCAAGCGGAGGAGCCGAACAACTGTACCACCAT
GGCCATGGCGCCCGTTTTGGACAAGCTGGATGCTGACATCCTCTGTCTTCAGGAGACTAAAGTTACCAGGGATGCACTGA
CAGAGCCCCTGGCTATTGTTGAGGGCTACAACTCCTATTTCAGCTTCAGCCGCAACCGGAGTGGCTATTCCGGTGTAGCC
ACCTTCTGTAAGGACTGCGCCGCCCCAGTGGCTGCTGAAGAAGGCCTGAGTGGCCTCCTTGCCCCTCAGAATGGGGATGT
GGGTTGCTATGGAAACATGGATGAGTTCAGCCAAGAGGAGCTTCGGGCTCTGGATAATGAGGGCCGGGCCCTCCTCACTC
AGCACAAGATCCGCACCCGGGATGGTAAGGGGAAGATCTTGACCATAATCAACGTGTATTGCCCCCACGCTGACCCTGGG
AGGCCTGAGCGGCTGACCTTTAAGATGCGCTTCTATCACTTGCTGCAGATCCGAGCAGAAGCCCTCCTGGCAGCTGGCAG
CCATGTGATCATTCTAGGTGACTTGAATACAGCGCACCGCCCCATTGACCATTGGGATGCAGTCAGCCTGGAAGGCTTTG
AAGAGGACCCAGGACGCAGGTGGATGGACGGCCTGCTCAGTAAGCTGGATTACCAGGGTGGGTCCCACGTAGGGGCTTTT
ATTGATACCTACCGCTGCTTCCATCCAAAGCAGGAGAGGGCCTTTACCTGCTGGTCAACAATCACTGGCACCCGCCGTCT
GAACTATGGCTCCCGGATTGACTATGTGCTGGGAGACAGGACTCTGGTTATAGACACCTTCCAGGACTCCTTCCTGCTGC
CTGAGGTGATGGGCTCTGACCATTGCCCCGTGGGTGCAGTCTTGAGCGTGTCTTCTGTGCCGGCAAAACAATGCCCTCCT
CTTTGCACCCGCTTCCTCCCTGAGTTTTCAGGCACCCAGCTCAAGATCCTTCATTTCCTAGTCCATCCCAAACAAGAGCC
TGTGTCCAAGCAGTCAGTGCTGCAGCTCAGCAATCAAACCCAGGGACAGATGCGCCAAAACAAAGCCCATGTGCGCGTGA
TCAGGCTTCGGCCAAGTCGGGCTGGCTCCAGCAAAGGCCAAAAAAAACTGATTAACTACTTCCGGCCATCCTCCAGCCGT
CTCCAAGCTTCTACCAATTTGGAACTTCCTAACCTGCGTGCCCTTGTGACTCCAAAGATCCCAGAAGACGAGGTGATGGG
CAAAGGGGTAGAGGGGCAGGCCAAGGATGAGAAGGAGCTACGGACCTCATTCTGGAAGTCTGTGCTGGGGGGTCCCTTGC
CCATGCCGCTCTGTGGGGGCAATGGGGAGCCATGTGTGATGCGAACGGTGAAGAAGGCAGGACCCAACCAGGGCCGTCAC
TTCTACATGTGTTCCAGGCCCCGGGGGCCTTCCACTGACCCCTCTTCTTGCTGCAACTTCTTCCTCTGGAGCAGGCCCAG
CTGA

Alignment

ORF - retro_mluc_287 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.41 %
• Parental protein coverage: 85.16 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MLRVVSWNINGIRSPLQAEEPNSCTTMAMARVLDKLDADILCLQETKVTRDALTEPLAIIEGYNSYFSFS
          MLRVVSWNINGIRSPLQAEEPN.CTTMAMA.VLDKLDADILCLQETKVTRDALTEPLAI.EGYNSYFSFS
Retrocopy MLRVVSWNINGIRSPLQAEEPNNCTTMAMAPVLDKLDADILCLQETKVTRDALTEPLAIVEGYNSYFSFS

Parental  RNRSGYSGVATFCKDGATPVAAEEGLSGLLAPQNGDVGCYGNMDEFSQEELRALDNEGRALLTQHKIRTW
          RNRSGYSGVATFCKD.A.PVAAEEGLSGLLAPQNGDVGCYGNMDEFSQEELRALDNEGRALLTQHKIRT.
Retrocopy RNRSGYSGVATFCKDCAAPVAAEEGLSGLLAPQNGDVGCYGNMDEFSQEELRALDNEGRALLTQHKIRTR

Parental  DGKEKILTIINVYCPHADPGRPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNL
          DGK.KILTIINVYCPHADPGRPERLTFKMRFY.LLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAV.L
Retrocopy DGKGKILTIINVYCPHADPGRPERLTFKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVSL

Parental  ECFEEDPGRKWMDGLLSKLDCQGGSNVGAFIDTYRCFHPKQERAFTCWSTITGARRLNYGSRIDYVLGDR
          E.FEEDPGR.WMDGLLSKLD.QGGS.VGAFIDTYRCFHPKQERAFTCWSTITG.RRLNYGSRIDYVLGDR
Retrocopy EGFEEDPGRRWMDGLLSKLDYQGGSHVGAFIDTYRCFHPKQERAFTCWSTITGTRRLNYGSRIDYVLGDR

Parental  TLVIDTFQDSFLLPEVMGSDHCPVGAVLNVSSVPAKQCPPLCTRFLPEFSGTQLKILHFLVHPKQEPVSK
          TLVIDTFQDSFLLPEVMGSDHCPVGAVL.VSSVPAKQCPPLCTRFLPEFSGTQLKILHFLVHPKQEPVSK
Retrocopy TLVIDTFQDSFLLPEVMGSDHCPVGAVLSVSSVPAKQCPPLCTRFLPEFSGTQLKILHFLVHPKQEPVSK

Parental  QSVLQLSNQTQGQMRQNKAHVRSIRPRPSRAGSGKGQKKLINYFQPSSSRLQASTNLELPNLRALVTPKI
          QSVLQLSNQTQGQMRQNKAHVR.IR.RPSRAGS.KGQKKLINYF.PSSSRLQASTNLELPNLRALVTPKI
Retrocopy QSVLQLSNQTQGQMRQNKAHVRVIRLRPSRAGSSKGQKKLINYFRPSSSRLQASTNLELPNLRALVTPKI

Parental  PEDKVMGKGVEGQAKD
          PED.VMGKGVEGQAKD
Retrocopy PEDEVMGKGVEGQAKD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_287 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000016584	1 retrocopy	retro_cjac_2967,
Myotis lucifugus	ENSMLUG00000016298	1 retrocopy	retro_mluc_287 ,
Mus musculus	ENSMUSG00000025269	1 retrocopy	retro_mmus_2564,
Rattus norvegicus	ENSRNOG00000000166	1 retrocopy	retro_rnor_1061,