RetrogeneDB ID: retro_mluc_286

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429767:7232261..7234181(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030652
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000003047
• Aliases: None
• Description: None

Sequence

>retro_mluc_286
ATGGCTCTGTCGCGGGGGCTCCCCCGAGAGCTGGCCGAGGGCGTGGCCAGGGGCCGGGTGCTGGTGGTGGGCGCGGGCAG
CATCGGCTGTGAGCTCCTCAAGAACCTCGTGATCACCGGTTTCTCCCACATCGACCTGATTGATCTGGATACTATTGATG
TCAGCAACCTCAACAGGCAGTTTTTGTTTCAAAAGAAACATGTTGGAAGATCAAAGGCCCAGGTTGCCAAAGAAAGTGTA
CTGCAGTTTTACCTGAAAGCTAATATCATAGCCTACCATGACAGCATCATGAACCCCGACTATAGTGTGGAATTTTTTCG
ACAATTTATATTGGTTATGAATGCTTTAGATAACAGAGCTGCCCGCAACCATGTTAATAGGATGTGTCTGGTAGCTGATG
TCCCTCTTATTGAGAGTGGAACTGCTGGTTATCTTGGGCAAGTAACTACTATCAGAAAGGGTGTGACTGAATGTCATGAA
TGTCATCCCAAACCAACTCAGAGAACTTTTCCTGGCTGTACAATTCGTAACACACCTTCAGAACCTATTCATTGCATTGT
TTGGGCAAAGTATTTGTTCAATCAGTTGTTTGGGGAAGAAGATGCTGATCAAGAAGTATCCCCTGACAGAGCTGACCCTG
AAGCTTCCTGGGAACCAATGGAAGCTGAAGCCAGAGTCAGAGCATCAAATGAAGATGGTGACATTAAGCGTATTTCCACA
AAGGAATGGGCTAAATCAACTGGATATGATCCAGTTAAACTTTTTACCAAGCTTTTTAAAGATGATATCAGGTATCTGTT
GACAATGGACAAACTATGGCGGAAAAGGAAACCTCCGGTTCCATTGGACTGGGCTGAAGTACAGAGTCAAGGAGAGGAAA
TCAATGCAGCAGATCAACAAAATGAACCCCAGTTAGGTCTGAAAGACCAGCAAGTTCTAGATGTAAAGAGCTATGCACGT
CTTTTTTCAAAGAGCATTGAGACTTTGAGAGTTCATTTAGCAGAAAAGGGGGATGGAGCTGAGCTCATTTGGGACAAGGA
TGACCCATCTGCAATGGATTTTGTCACCTCTGCTGCAAATCTCAGGATGCATATTTTCAGTATGAATATGAAGAGCAGAT
TTGATATAAAATCAATGGCAGGGAACATTATTCCTGCTATCGCTACTACTAATGCGGTGATTGCTGGGTTAATAGTATTG
GAAGGATTGAAGATTTTATCAGGAAAAATAGACCAGTGTAGAGCAATCTTTTTGAATAAACAACCAAACCCAAGGAAGAA
GCTCCTTGTGCCTTGTGCACTGGATCCTCCCAACCCTAATTGTTACATATGTGCCAGCAAGCCAGAGGTGACTGTGCGCC
TGAATGTCCATAAAGTGACCGTTCTCACATTACAAGATAAGATTGTGAAAGAAAAATTTGCTATGGTAGCACCAGATGTC
CAAATCGAGGATGGGAAAGGAACGATCCTAATATCTTCGGAAGAGGGAGAGACAGAAGCTAATAATCACAATAAGTTGTC
AGAATTTGGAATTAGAAATGGGAGCCGGCTTCAAGCAGATGACTTTCTTCAGGACTACACTTTATTGATCAACATCCTTC
ATAGTGAAGACCTAGGAAAGGATATTGAATTTGAAGTTGTTGGCGATGCCCCAGAAAAAGTGGGGCCCAAACAAGCTGAA
GATGCTGCCAAAAGCATAACCAATGGCAGTGACGATGGAGCTCAGCCTTCGACATCCACAGCACAAGAGCAAGATGATGT
GCTCATAGTTGATTCCGATGAAGAAGGTCCTTCAAATAATGCTGACATCAGTGAAGAGAGAAGTCGCAAGAGGAAATTGG
ATGAGAAAGAGAATATCAGTACAAAGAGGTCACACACAGAACAGACAAGAGAGCTTGATGATATTACAGCGTTAGATTGA

Alignment

ORF - retro_mluc_286 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.81 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MALSRGLPRELAEAVARGRVLVVGAGGIGCELLKNLVITGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGR
          MALSRGLPRELAE.VARGRVLVVGAG.IGCELLKNLVITGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGR
Retrocopy MALSRGLPRELAEGVARGRVLVVGAGSIGCELLKNLVITGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGR

Parental  SKAQVAKESVLQFYPKANIIAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESG
          SKAQVAKESVLQFY.KANIIAYHDSIMNPDY.VEFFRQFILVMNALDNRAARNHVNRMCL.ADVPLIESG
Retrocopy SKAQVAKESVLQFYLKANIIAYHDSIMNPDYSVEFFRQFILVMNALDNRAARNHVNRMCLVADVPLIESG

Parental  TAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDR
          TAGYLGQVTTI.KGVTEC.ECHPKPTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDR
Retrocopy TAGYLGQVTTIRKGVTECHECHPKPTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDR

Parental  ADPEASWEPMEAEARVRASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPV
          ADPEASWEPMEAEARVRASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPV
Retrocopy ADPEASWEPMEAEARVRASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPV

Parental  PLDWAEVQSQGEEINAADQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPS
          PLDWAEVQSQGEEINAADQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPS
Retrocopy PLDWAEVQSQGEEINAADQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPS

Parental  AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNK
          AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCR.IFLNK
Retrocopy AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRAIFLNK

Parental  QPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTIL
          QPNPRKKLLVPCALDPPNPNCY.CASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTIL
Retrocopy QPNPRKKLLVPCALDPPNPNCYICASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTIL

Parental  ISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVVGDAPEKVGPKQAE
          ISSEEGETEANNH.KLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKD.EFEVVGDAPEKVGPKQAE
Retrocopy ISSEEGETEANNHNKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKDIEFEVVGDAPEKVGPKQAE

Parental  DAAKSITNGSDDGAQPSTSTEAQEQDDVLIVDSDEEGPSNNADISEERSRKRKLDEKENISTKRSRTEQT
          DAAKSITNGSDDGAQPSTST.AQEQDDVLIVDSDEEGPSNNADISEERSRKRKLDEKENISTKRS.TEQT
Retrocopy DAAKSITNGSDDGAQPSTST-AQEQDDVLIVDSDEEGPSNNADISEERSRKRKLDEKENISTKRSHTEQT

Parental  RELDDIIALD
          RELDDI.ALD
Retrocopy RELDDITALD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_286 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000011975	3 retrocopies	retro_chof_1034, retro_chof_548, retro_chof_848,
Myotis lucifugus	ENSMLUG00000003047	1 retrocopy	retro_mluc_286 ,
Monodelphis domestica	ENSMODG00000011934	1 retrocopy	retro_mdom_1509,
Pongo abelii	ENSPPYG00000009837	1 retrocopy	retro_pabe_304,
Rattus norvegicus	ENSRNOG00000021113	1 retrocopy	retro_rnor_939,
Sus scrofa	ENSSSCG00000002876	1 retrocopy	retro_sscr_941,