RetrogeneDB ID: retro_mluc_259

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429998:737980..740983(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000013280
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000005901
• Aliases: None
• Description: None

Sequence

>retro_mluc_259
ATGGCCGCCGCCACGGCTCCGCGTCTGCAGGAACAGTCGGAGATGGAAGATGCTGATAATTCTGGAAAGAGTGTACACGA
AGAAAATGGAGAAGTATCAGAAGACCAATCTCAAAATAAGCACAGTCGTCACAAGAAAAAGAAGCATAAACACAGAAGTA
AGCATAAGAAACATAAACATTCCTTAGAAGAAGACAAGGATAAAAAACGTAAACATAAGAAGCGCAAAAGAAGAGAGGTT
GTAGATGCTTCTGACAAAGAAGGTTTGTCTCCGGCAAAAAGAACTAAATTTGATGATTTAGCGTTGCTGGAAGACTTGGA
AAAACAGAGAGCCTTGATTAAAGCTGAACTTGATAATGAGTTCATGGAAGGAAACGTCCGGTCAGGGATGGGGCCCATAT
TACAAGGTTATGAATCTGGCTCTGAAGAAGAGGGGGAAATTCATGAAAAGGCACGAAATGGAAATAGGTCTAGTATTAGA
TCTTCCACTACCAAGGGGAAACTTGAACTTATGGACAATAAAAATAGTACAAAAAGGCGAAGTAGAAGCAGATCCAAAGA
ACGGACTAGCCATAGGTCTGATAAAAAGAAAAGTAAGGGAAGTGTTAAAGAGAAGACAACTAGGAGCAAATCAAAGGAGA
GGAAAAAGTCTAAAAGTCCATCCAAAAGAAGTAAGTCTCAAGATCAAGCAAGAAAGTCAAAATCTCCTACCCTTAGAAGG
CGATCTCAGGAGAAAATTGGGAAGGCCGGATCTCCTACTGATGACAAGGTTAAGATTCAAGATAAAAGTAAGTCAAAAGA
TAGAAAAAAATCCCCAGTTATAAATGAAAGAAGTCGTGATCGAGGCAAAAAATCCAGATCGCCAGTTGACTTAAGAGGTA
AATCCAAAGACAGAAGGTCACGGTCCAAAGAGAGAAAGTCAAAACGGTCTGAAACTGATAAAGAAAAGAAGCCAATTAAA
TCTCCCTCTAAAGATGCTTCTTCTGGGAACGAAAATAGATCACCCAGTAGAAGACCTGGTCGTAGTCCTAAGAGAAGAAG
TTTCTCTCCAAAACAACGGGATAAATCCAGAAGAAGTAGATCTCCACTTTTAAATGATAGAAGGTCTAAGCAGAGCAAGT
CACCTTCTCGAAATCTGTCTCCCGGTAGAAGAGCTGAGAGCCGATCCTTGGAAAGAAAACTAAGGAGACGACTTTCTTCC
CCAAGAACACAACCTCGTGACGATATCCTCAGTAGACGCAAGAGATCAAAAGATGCCACCCCGATAAGTAAGTGGTCTCC
AACCCGAAGAAGAGCAAGTAGATCTCCCATTAGAAGGAGGTCTCGCTCCCCACTCAGGCGGAGCAGGTCTCCTAGAGGAA
GAAGCAGGTCCCCTCGGAGAAGGGATAGAGGTCGGAGAAGCAGATCACGTTTGAGAAGGCGGTCTCAATCACCTTCAGAA
GGTGGTCGTAGAAGTAGGAGCAGAAGCAAAGTAAAGGAGAATAAATTTAAAGGAAGTCTTTCTGAAGGAATGAAAGTTGA
GCAAGAATCTTCATCTGAAGATAACCTCGAAGACTTTGAGGTAGAAGAAGAAGAAGATGAAGAGGCCCTAATAGAGCAGA
GAAGAATACAAAGGCAAGCAATTGTCCAGAAATATAAATATCTTGCTGACGATAGCAATAGGTCTGTGCCGTCTGAACCC
AGCAGCCCCCAGAGTAGTACTCGTACACGGTCACCTTCTCCAGATGACATTTTGGAAAGGGTAGCTGCTGATGTTAAAGA
GTATGAATGGGAAAATGTTGACACATTTGAGGCCTTGGTAAAAGCCAAGCATAATCTAATGACAGTTGAACCAAATAATG
GGTCAGCTCAGAAAAAGCTGTTGGCACTTGATATGTTTACAGAATCTGATGATATGTTTGCTGCATATTTTGATAGTGCT
CATCTTCGGGCTGCTGGCGTTGGAAAAGACTTTAAAGAGAATCCTAACCTCAGGGATAACTGGACTGATGCAGAAGGCTA
TTATCGTGTGAACATAGGCGAAGTGTTAGATGAGCGCTATAATGTGTATGGCTACACTGGTCAAGGTGTATTCAGTAATG
TCGTACGAGCCAGAGATTCTGCAAGAGCCAACCAAGAAGTGGCTGTAAAGATCATCAGAAACAATGAACTCATGCAGAAA
ACTGGTTTAAAAGAACTCGAATTCTTGAAAAAACTTAATGATGCTGATCCTGATGACAAATTTCATTGTTTGCGGCTCTT
CAGACACTTTTATCACAAACAGCATCTCTGTCTCGTATTTGAGCCGCTCAGCATGAATTTACGAGAGGTGTTAAAAAAAT
ATGGTAAGGATGTTGGTCTTCATATTACAGCTGTAAGGTCCTATAGTCAGCAGTTGTTCTTGGCATTGAAACTCCTTAAA
AGATGCAATATCCTACATGCTGATATCAAGCCAGACAATATCCTGGTTAATGAATCAAAAACTATTTTAAAGCTCTGTGA
TTTTGGGTCGGCTTCACATGTTGCGGATAATGACATAACTCCTTATCTTGTCAGTCGATTTTATCGTGCTCCTGAAATCA
TTATAGGTAAAAGCTATGACTATGGCATAGATATGTGGTCTGTAGGTTGTACCTTATATGAACTCTATACTGGAAACATT
TTATTTCCTGGCAAAACCAACAACCATATGTTGAAGCTCACCATGGATCTCAAAGGAAAGATGCCAAATAAGATGATTCG
GAAAGGTGTATTCAAAGACCAACATTTTGATCAAAACCTCAATTTCATGTACATAGAAGTTGATAAAGTAACAGAGAAGG
AGAAAGTTACTGTCATGAGCACCATTAATCCAACTAAGGACCTGTTGGCTGACTTGATTGGGTGCCAGCGACTTCCTGAA
GACCAACGTAAAAAAGTACACCAGCTAAAAGACTTGTTGGACCAGATCCTAATGTTGGACCCAGCTAAACGGATTAGCAT
CAACCAGGCCCTACAGCATGTCTTTATCCAGGAAAAAATTTAA

Alignment

ORF - retro_mluc_259 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.09 %
• Parental protein coverage: 99.8 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VAATGQESVTPDYRMEDADNSEKSIHEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSLEEDKDKKH
          .AA...........MEDADNS.KS.HEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSLEEDKDK..
Retrocopy MAAATAPRLQEQSEMEDADNSGKSVHEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSLEEDKDK--

Parental  KHKHKHKKHKRKEVIDASDKEGLSPAKRTKLDDLALLEDLEKQRALIKAELDNELMEGKVQSGMGLILQG
          ..K.KHKK.KR.EV.DASDKEGLSPAKRTK.DDLALLEDLEKQRALIKAELDNE.MEG.V.SGMG.ILQG
Retrocopy --KRKHKKRKRREVVDASDKEGLSPAKRTKFDDLALLEDLEKQRALIKAELDNEFMEGNVRSGMGPILQG

Parental  YESGSEEEGEIHEKARNGNRSSTRSSTTKGKLELMDNKNSTKKRSKSRSKERTRHRSDKKKSKGGVEIVK
          YESGSEEEGEIHEKARNGNRSS.RSSTTKGKLELMDNKNSTK.RS.SRSKERT.HRSDKKKSKG....VK
Retrocopy YESGSEEEGEIHEKARNGNRSSIRSSTTKGKLELMDNKNSTKRRSRSRSKERTSHRSDKKKSKGS---VK

Parental  EKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARSPTDDKVKIEDKSKSKDRKKSPV
          EKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKA.SPTDDKVKI.DKSKSKDRKKSPV
Retrocopy EKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKAGSPTDDKVKIQDKSKSKDRKKSPV

Parental  INERSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRSP
          INERSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSG.ENRSPSRRPGRSP
Retrocopy INERSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGNENRSPSRRPGRSP

Parental  KRRSLSPKQRDKSRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPRDDI
          KRRS.SPKQRDKSRRSRSPLLNDRRSKQSKSPSR.LSPGRRA.S....R......RRRLSSPRT.PRDDI
Retrocopy KRRSFSPKQRDKSRRSRSPLLNDRRSKQSKSPSRNLSPGRRAES----RSLERKLRRRLSSPRTQPRDDI

Parental  LSRRERSKDASPISRWSPSRRRASRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRS--
          LSRR.RSKDA.PIS.WSP.RRRASRSPIRRRSRSPLRRSRSPR.RSRSPRRRDRGRRSRSRLRRRS.S..
Retrocopy LSRRKRSKDATPISKWSPTRRRASRSPIRRRSRSPLRRSRSPRGRSRSPRRRDRGRRSRSRLRRRSQSPS

Parental  RGGRRRRSRSKVKEDKFKGSLSEGMKVEQESSSEDNLEDFDVEEE-DEEALIEQRRIQRQAIVQKYKYLA
          .GGRR.RSRSKVKE.KFKGSLSEGMKVEQESSSEDNLEDF.VEEE.DEEALIEQRRIQRQAIVQKYKYLA
Retrocopy EGGRRSRSRSKVKENKFKGSLSEGMKVEQESSSEDNLEDFEVEEEEDEEALIEQRRIQRQAIVQKYKYLA

Parental  EDSNMSVPSEPSSPQSSTRTRSPSPDDILERVAADVKEYERENVDTFEASVKAKHNLMTVEQNNGSAQKK
          .DSN.SVPSEPSSPQSSTRTRSPSPDDILERVAADVKEYE.ENVDTFEA.VKAKHNLMTVE.NNGSAQKK
Retrocopy DDSNRSVPSEPSSPQSSTRTRSPSPDDILERVAADVKEYEWENVDTFEALVKAKHNLMTVEPNNGSAQKK

Parental  LLAPDMFTESDDMFAAYFDSARLRAAGIGKDFKENPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQG
          LLA.DMFTESDDMFAAYFDSA.LRAAG.GKDFKENPNLRDNWTDAEGYYRVNIGEVLD.RYNVYGYTGQG
Retrocopy LLALDMFTESDDMFAAYFDSAHLRAAGVGKDFKENPNLRDNWTDAEGYYRVNIGEVLDERYNVYGYTGQG

Parental  VFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLV
          VFSNVVRARD.ARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLV
Retrocopy VFSNVVRARDSARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLV

Parental  FEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFG
          FEPLSMNLREVLKKYGKDVGLHI.AVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFG
Retrocopy FEPLSMNLREVLKKYGKDVGLHITAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFG

Parental  SASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKG
          SASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTG.ILFPGKTNNHMLKL.MDLKG
Retrocopy SASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGNILFPGKTNNHMLKLTMDLKG

Parental  KMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQL
          KMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTE.EKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQL
Retrocopy KMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTEKEKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQL

Parental  KDLLDQILMLDPAKRISINQALQHAFIQEKI
          KDLLDQILMLDPAKRISINQALQH.FIQEKI
Retrocopy KDLLDQILMLDPAKRISINQALQHVFIQEKI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_259 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000112739	1 retrocopy	retro_hsap_4212,
Gorilla gorilla	ENSGGOG00000006422	1 retrocopy	retro_ggor_2821,
Myotis lucifugus	ENSMLUG00000005901	1 retrocopy	retro_mluc_259 ,
Monodelphis domestica	ENSMODG00000009756	1 retrocopy	retro_mdom_1114,
Nomascus leucogenys	ENSNLEG00000011291	1 retrocopy	retro_nleu_1453,
Pan troglodytes	ENSPTRG00000017683	1 retrocopy	retro_ptro_2859,