RetrogeneDB ID: retro_mluc_2461

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430459:42318..43412(+)
• Located in intron of: ENSMLUG00000007276

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OXA1L
• Ensembl ID: ENSMLUG00000012893
• Aliases: None
• Description: None

Sequence

>retro_mluc_2461
TTTGCAGAAGCCCAGGTTCAGGCCCCTCTGTCATTCCTGCAATGCCCTCACCCACAGCAGTAACTGAGGTGGCTTCTGGA
GAGACTGCAGATGTAGTCCAAGCTGCTGCAGAACAGAGCTTCACTGAACTTGGGCTGGGGTCATATACCCCAGTGGGATT
GATCCAGAACCTACTGGAATATATGCATGTTGACCTTGGCCTCCCTTGGTGGAGGGCCATTGCTCTGTGTACAGTCCTTG
CCCGCTGCCTGGTGTTTCCTCTCATTGTGAAGGGCCAACGAGAGGCAGCCAAGATCCACAGCCACATGCCAGAGATCCAG
AAGTTTTCCACTCGAATCAGAGAGGCCAAGTTGGCAGGAGACCATGCTGAGTTTTACAGGTCCTCCTTGGAGATGACATT
GTATCAGAAAAAGCATGACATTAAACTCTTTAAACCTCTCATTCTACCTCTGACTCAGGCGCCAATCTTCATCTCCTTCT
TCATTTCCTTGAGAGAAATGGCCAACCTTCCTGTACCCAGCCTACAGACAGGTGGCCTCTGGTGGTTCCAGGATCTCACA
CTATCTGACCCCACCTACATATTACCACTGGTAGTCACTGCTACAATGTGAGGTGTCCTTGAGTTATGTGCTGAGACTGG
TGTGCAAAGTTCTGACCTCCACTGGATGAGAAATGTTATGAGATTGATAACCCTTGCAGTCTTGCCCATAACTGTCCATT
TCCCCTTGGCAGTGTTCGTGTATTGGTTCTCCTCGAATATGTTTTCCCTGGTCCAGGTATCTTGCCTCCGGATTCCAGGT
GTACACACTATGCTTAAAATCCCCCAATGTGCTGTGCATGACTCCGACAAATTACCTCCACGGGAAGGCTTCATAAAGAG
CTTCAAAAGTGGCTGGAAGAATGCTGAAATCAACTATCAGTTACAAAAGCGTGAATGGTGCATGCAGAATCACTTGGAAC
TAGCAGCCAGGGCTCCCTTACGACAGACCTTTACCCACAACCCTCTGCTACAGCATGGTAAAAATCCCCCTCCCAACACC
CCTAACAGCAGCAGCAACAAACCAAAGTCAAAGAAACCCTGGCGTGACACACTC

Alignment

ORF - retro_mluc_2461 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.99 %
• Parental protein coverage: 78.83 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FAEAQVQAP-PVIPATPSPTAVTEVASGETADVVQAAAEQSFAELGLGSYTPVGLIQNLLEYMHVDLGLP
          FAEAQVQAP..VIPA.PSPTAVTEVASGETADVVQAAAEQSF.ELGLGSYTPVGLIQNLLEYMHVDLGLP
Retrocopy FAEAQVQAP<SVIPAMPSPTAVTEVASGETADVVQAAAEQSFTELGLGSYTPVGLIQNLLEYMHVDLGLP

Parental  WWGAIALCTVLARCLVFPLIVKGQREAAKIHNHMPEIQKFSTRIREAKLAGDHAEFYRASSEMTLYQKKH
          WW.AIALCTVLARCLVFPLIVKGQREAAKIH.HMPEIQKFSTRIREAKLAGDHAEFYR.S.EMTLYQKKH
Retrocopy WWRAIALCTVLARCLVFPLIVKGQREAAKIHSHMPEIQKFSTRIREAKLAGDHAEFYRSSLEMTLYQKKH

Parental  DIKLFKPLILPLTQAPIFISFFISLREMANLPVPSLQTGGLWWFQDLTLSDPTYILPLVVTATMWGVLEL
          DIKLFKPLILPLTQAPIFISFFISLREMANLPVPSLQTGGLWWFQDLTLSDPTYILPLVVTATM.GVLEL
Retrocopy DIKLFKPLILPLTQAPIFISFFISLREMANLPVPSLQTGGLWWFQDLTLSDPTYILPLVVTATM*GVLEL

Parental  GAETGVQSSDLHWMRNVMRLIPLAVLPITVHFPSAVFVYWFSSNMFSLVQVSCLRIPGVRTMLKIPQRVV
          .AETGVQSSDLHWMRNVMRLI.LAVLPITVHFP.AVFVYWFSSNMFSLVQVSCLRIPGV.TMLKIPQ..V
Retrocopy CAETGVQSSDLHWMRNVMRLITLAVLPITVHFPLAVFVYWFSSNMFSLVQVSCLRIPGVHTMLKIPQCAV

Parental  HDPDKLPPREGFIKSFKSGWKNAELNYQLQERERRMQNHLELAARGPLRQTFTHNPLLQHGKNPPPNTPN
          HD.DKLPPREGFIKSFKSGWKNAE.NYQLQ.RE..MQNHLELAAR.PLRQTFTHNPLLQHGKNPPPNTPN
Retrocopy HDSDKLPPREGFIKSFKSGWKNAEINYQLQKREWCMQNHLELAARAPLRQTFTHNPLLQHGKNPPPNTPN

Parental  SSSNKPKSKQPWRDTL
          SSSNKPKSK.PWRDTL
Retrocopy SSSNKPKSKKPWRDTL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2461 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000012893	1 retrocopy	retro_mluc_2461 ,
Monodelphis domestica	ENSMODG00000005347	1 retrocopy	retro_mdom_1308,
Oryctolagus cuniculus	ENSOCUG00000000720	1 retrocopy	retro_ocun_367,
Otolemur garnettii	ENSOGAG00000000631	1 retrocopy	retro_ogar_2369,
Ictidomys tridecemlineatus	ENSSTOG00000003318	1 retrocopy	retro_itri_352,