RetrogeneDB ID: retro_mluc_241

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429889:2591013..2592330(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000006193
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000010984
• Aliases: None
• Description: None

Sequence

>retro_mluc_241
TGGCAGTTTCTGACATTAAGCAAAAAATTTAAGCTGGATCCTCTAACAAAAGTACCCAGCTCCCATGGCAAGAGGGATAA
AGATTTACCAGGATCTCTCCCATGCCAATTAGGGCACAAAGAAAGGAAGTTGAGTGCTTCACAAATTCAAGCCTTCCAAG
ATGCCTACAACTTCTTTACCAAGGATAAAACCGACTGTATTGATTTTCATGGAATGATGTGCACTTTAGCTAAGGTGGGA
ATGCATCTAACCAAGCATGATGTCTATAATGAATTAAAATATGCTGATATTGACCGAGATGGGAAAGTGAATTTCTCAGA
CTTTATAAAGGTGCTAACAGATAAGGACAGCTTCCTTAGACCTGTGGTTCCAGAAAAAGACAAGTGTTTAGATTTTGCTG
GCAACCCAGGGATCCTGTTGTTTGAAATTCTATCAAAGCTTGTAGAGATTTCAGCCTTACCCAGAAAGGCTATAATAGAA
TTAGTAAGCTATTTCCAAAGGAAATTCCAAGAAACCACTGCAGGAATATTGTGGAATCCCTCCCCTACAGATTATGGAAA
AAGGAGATTTAAGCCAGACATGTGCACACCTCTGACCTCAAGCCCAACTGCCTTTGCTAATGCTACTTGGATTGCAATAA
TGAAAGAAAAAGATTTATTCAGATATCTTGAGGAGCTCAGGAGATGCAATCCTCCTTCAGACAACCCATATTCAAAAATA
CCCATCTTTCCATTGTTTCCTAATGTGGATGGGCTGGTAATGGGAAAGCCATTCAAAGACATGCATAAATTAGAAATGCT
TAGGAGAAAGGAGCCTCTGAGTTTCTTTGATAACTACTTTTTCCATAAAAGAGATTGGAAAACACAGGCAGCAAATATAA
AGCCTGTCGACTCTCCCTCCGGCTACCCAACTGAGATCCTCACCATTGACCAAATGTTGAAGAAAAAGCAGAAATGGACA
GTGACTGAGGCAGCTGCTCTTAAACCACATGTGAAGAGAGCTATAGAAACCTATAACTTAGGAATTGCTCTTGAGCACCG
GAAAGAAATGCTAAATTTCTGGCATAAGATCCGAGGGGATTTGGTTGGAATAGACACTAAAAATGAGTCCTTTTATGAAA
CCTTTTCTACTTATACATGGTCCTGGAATGTTTGCCAAGAATTACTTTCCCCAAAGGACTTAAGGTTATATGATGGCTGC
ATGAATAGAAATTCCTTCCACAATTCTTCAGTCTCTTCCTCTTCGAATACCAGTGAATGTGACATAGAAACAGGAAGAAA
AAGAAAACAGAAAGGTTTCAAAGGGTTTCAACAATGA

Alignment

ORF - retro_mluc_241 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.15 %
• Parental protein coverage: 98.86 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IKRKFKLDPLTKIPSAHGKRDKVLPGSFPCQLGHKERKLSASQIQAFQDAYNFFTKDKTGCIDFHGMMCT
          ...KFKLDPLTK.PS.HGKRDK.LPGS.PCQLGHKERKLSASQIQAFQDAYNFFTKDKT.CIDFHGMMCT
Retrocopy LSKKFKLDPLTKVPSSHGKRDKDLPGSLPCQLGHKERKLSASQIQAFQDAYNFFTKDKTDCIDFHGMMCT

Parental  LAKVGMHLTKHDLYNELKYADIDGDGKVNFSDFMKVLTDKDRFLRAVVPEKDKCLDFAGNPGILLFEILS
          LAKVGMHLTKHD.YNELKYADID.DGKVNFSDF.KVLTDKD.FLR.VVPEKDKCLDFAGNPGILLFEILS
Retrocopy LAKVGMHLTKHDVYNELKYADIDRDGKVNFSDFIKVLTDKDSFLRPVVPEKDKCLDFAGNPGILLFEILS

Parental  KLVEISALPRKAIIELVSYFQRKFQETTAGILWNPSPTDYGKRRFKADMCTPLTSSTAAFANATRIAVMK
          KLVEISALPRKAIIELVSYFQRKFQETTAGILWNPSPTDYGKRRFK.DMCTPLTSS..AFANAT.IA.MK
Retrocopy KLVEISALPRKAIIELVSYFQRKFQETTAGILWNPSPTDYGKRRFKPDMCTPLTSSPTAFANATWIAIMK

Parental  EKDLFKYLEELRRCNPPSDNPYSKIPIFPLFPNVDGLVMGKPFKDMHKLEMLRRKEPLSFFDNYFFHKRD
          EKDLF.YLEELRRCNPPSDNPYSKIPIFPLFPNVDGLVMGKPFKDMHKLEMLRRKEPLSFFDNYFFHKRD
Retrocopy EKDLFRYLEELRRCNPPSDNPYSKIPIFPLFPNVDGLVMGKPFKDMHKLEMLRRKEPLSFFDNYFFHKRD

Parental  WKTQAANIKLIDSPSGYPPELLTIDQMLKKKEKWTVAEAAALKPHVKRAIEIYNLGTALEHRKEMLNFWH
          WKTQAANIK..DSPSGYP.E.LTIDQMLKKK.KWTV.EAAALKPHVKRAIE.YNLG.ALEHRKEMLNFWH
Retrocopy WKTQAANIKPVDSPSGYPTEILTIDQMLKKKQKWTVTEAAALKPHVKRAIETYNLGIALEHRKEMLNFWH

Parental  KIRGDLVGVDTKNESFYETFSTYTWSWNVCQELLSPKDLRLFDACMNRNSFHNSSVSSSSDTSECDIETG
          KIRGDLVG.DTKNESFYETFSTYTWSWNVCQELLSPKDLRL.D.CMNRNSFHNSSVSSSS.TSECDIETG
Retrocopy KIRGDLVGIDTKNESFYETFSTYTWSWNVCQELLSPKDLRLYDGCMNRNSFHNSSVSSSSNTSECDIETG

Parental  RKRKRKGFKGSRQ
          RKRK.KGFKG..Q
Retrocopy RKRKQKGFKGFQQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_241 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000010984	1 retrocopy	retro_mluc_241 ,