RetrogeneDB ID: retro_mluc_2396

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430305:418036..418392(+)
• Located in intron of: ENSMLUG00000008569

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MCFD2
• Ensembl ID: ENSMLUG00000004210
• Aliases: None
• Description: None

Sequence

>retro_mluc_2396
CTGAGATCTCTGCAGCTGCTCAGAACCCCCTCCTGTGTGGCTTGCCCTGGGCCCTGTGTGCCCAGGTGCCAGGGCCCAGG
AGCCCCAGGGCTGGCTCCTCCCATCCCAGCAGCACGGGCCTGGATAAGAACACAGTGCACCAGCAAGAGCATGTCACGGA
ACATCCAGGTGTCATCAACCAACCAGAGGTGGGGATGTCCCCACAAGAACTGCAGCTCCATTATTTCAAAAGGCATGATT
ACAATGGCAGGGGTTTGCTTGACGGCCTAGAACTGTCCACAGCCATCGCTCATGTCCATAAGTAGGAGGGGAATGAGCAG
GCACCACTGATGAGTGAAGAGGAACTGGCTAACTTA

Alignment

ORF - retro_mluc_2396 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.07 %
• Parental protein coverage: 71.86 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MRSLQLLRTP-FLCGLLWACCASGTRAEQPGAGSSHHGSMGLDKHTVHDQEHIMEHLEGVINKPEAEMSP
          .RSLQLLRTP..LCGL.WA.CA.......P.AGSSH..S.GLDK.TVH.QEH..EH..GVIN.PE..MSP
Retrocopy LRSLQLLRTP<LLCGLPWALCAQVPGPRSPRAGSSHPSSTGLDKNTVHQQEHVTEH-PGVINQPEVGMSP

Parental  QELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEGGSEQEPLMSEEELINL
          QELQLHYFK.HDY.G..LLDGLELSTAI.HVHK..G.EQ.PLMSEEEL.NL
Retrocopy QELQLHYFKRHDYNGRGLLDGLELSTAIAHVHK*EGNEQAPLMSEEELANL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2396 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000003358	1 retrocopy	retro_btau_629,
Choloepus hoffmanni	ENSCHOG00000003286	6 retrocopies	retro_chof_110, retro_chof_1840, retro_chof_2447, retro_chof_3, retro_chof_41, retro_chof_581,
Felis catus	ENSFCAG00000009220	1 retrocopy	retro_fcat_42,
Macropus eugenii	ENSMEUG00000010002	1 retrocopy	retro_meug_2119,
Myotis lucifugus	ENSMLUG00000004210	1 retrocopy	retro_mluc_2396 ,
Ictidomys tridecemlineatus	ENSSTOG00000003692	1 retrocopy	retro_itri_1118,