RetrogeneDB ID: retro_mluc_2386

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430287:452603..453073(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000014729
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: UTP11L
• Ensembl ID: ENSMLUG00000001003
• Aliases: None
• Description: None

Sequence

>retro_mluc_2386
TCCCGACAGCTGGAACACCAAGAGCGAAGCCAGCCTGGCTTTCGAAAACATCTGGGCCTGCTGGAGAAAAAGAAAGATTA
CAAACTTCGTGCAAATGACTCCTGGAAAAAGCAAGAATACCTCAGAGCTCTTCGAAAGAAAGCTCTTGAAAAAAATCCAG
ATGAATTCTACTATAAAATGACTCGAGTTAAACTCCACGATGGAGTTCATGTTATCCCGGAGACGAAGGAAGAAGTAACT
CCAGAACAGCTGAAGCTGGGGAGAACTCAGGATGTCAAATATATAGAAATGAAAAGGGTTGCGGAAGCTAAGGAAATCAA
AAGACAAAGAGCTCCACCTGCTGGATTTCCAGGGGGAAGCAACAGAATAAGCATGTGTTCTTTTTTGACACTAAAAAGGA
AGTTGAACGGTTTGACATTGCAACTCGCCTGCGAACTGCCCCGGAGTTAGTGGACAGAGTCTTTAATAGA

Alignment

ORF - retro_mluc_2386 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.39 %
• Parental protein coverage: 62.45 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SRQREHRERSQPGFRKHLGLLEKKKDYKLRANDYRKKQEYLRALRKKALEKNPDEFYYKMTRVKLQDGVH
          SRQ.EH.ERSQPGFRKHLGLLEKKKDYKLRAND..KKQEYLRALRKKALEKNPDEFYYKMTRVKL.DGVH
Retrocopy SRQLEHQERSQPGFRKHLGLLEKKKDYKLRANDSWKKQEYLRALRKKALEKNPDEFYYKMTRVKLHDGVH

Parental  VIPQTKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIER-LKSELHLLDFQGKQQNKHVFFFDTKKEVERF
          VIP.TKEEVTPEQLKL.RTQDVKYIEMKRVAEAK.I.R..KS..........Q.....FF.DTKKEVERF
Retrocopy VIPETKEEVTPEQLKLGRTQDVKYIEMKRVAEAKEIKR<TKSSTCWISRGKQQNKHVFFF-DTKKEVERF

Parental  DIATHLRTAPELVDRVFNR
          DIAT.LRTAPELVDRVFNR
Retrocopy DIATRLRTAPELVDRVFNR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2386 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000001043	1 retrocopy	retro_cpor_1084,
Microcebus murinus	ENSMICG00000001496	1 retrocopy	retro_mmur_894,
Myotis lucifugus	ENSMLUG00000001003	1 retrocopy	retro_mluc_2386 ,
Mus musculus	ENSMUSG00000028907	1 retrocopy	retro_mmus_1968,
Oryctolagus cuniculus	ENSOCUG00000007154	2 retrocopies	retro_ocun_1285, retro_ocun_669,
Otolemur garnettii	ENSOGAG00000016492	2 retrocopies	retro_ogar_3229, retro_ogar_3324,
Rattus norvegicus	ENSRNOG00000007174	1 retrocopy	retro_rnor_1838,