RetrogeneDB ID: retro_mluc_2374

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430275:230135..230832(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PPIL6
• Ensembl ID: ENSMLUG00000003789
• Aliases: None
• Description: None

Sequence

>retro_mluc_2374
AAGGAACTTAAGAATGAAGTCTGGAAATCTTCTCCCAATGTCATGTGTTTTATTAATGATCAGCTGCTGGGTGATGCACT
TGAACTTCAGAAACGGGCCCACAAGGTGTGGGATATAGTTGACGCTAAGCCCCCTGCACTTGATGGGGCACTTCCTGTGG
ATTCTTCTACTAAATTCTTAAGGTACACGAAGCATGGCTTTGTGGTCTTGGATGTTTCTATTGATCTTTATCCAACTGGA
AGGTTGGTTTTTGAGCTATACTGTGACACATGTCCCAAAACATGTCAAAATGTTCAGCTCTGGTGCCCAGGAAAAGCAAG
GTTTTCTCAAAGTGGCATAGGCTACCTTATGTCAGTTCGGTTTTTCATCGAATAATAGAGAATGCTTGGATACAAGGGGA
GTGGCCGCAAAAGGAGACGGTGGACAGTCGATTTCTGTGCCAACATTTGAAGATGAAAGCTTTTCAATTCCTCGTAATAA
AATGGGATTTCTTGGAATGGTCAACAAAGGCTGTCCCAGCAGTGGTTCATAGTTCTACGGCACGTTACCATCAGCTCTCT
AGCTAGATACAAAACATGTGGCTTTGGGGCAATTGACTGAAGAAACAGAAGTTCTTCAACAACTAGCATTGGTGACAACA
GAGAATGACAGACCAATATAACAGTGTACAATTATTGACAGTGGAAATTTTCATGCT

Alignment

ORF - retro_mluc_2374 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.62 %
• Parental protein coverage: 75.08 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  RELKNEVWEYSSNVMCFINDLLLGDALELQKWAHKVWDMIDYKPPALYEALTMDFSTKFLSDTKHNFVFL
          .ELKNEVW..S.NVMCFIND.LLGDALELQK.AHKVWD..D.KPPAL..AL..D.STKFL..TKH.FV.L
Retrocopy KELKNEVWKSSPNVMCFINDQLLGDALELQKRAHKVWDIVDAKPPALDGALPVDSSTKFLRYTKHGFVVL

Parental  DISIGHHPVGRLVFELYCETCPKTCKNFQVLCTGKAGFSQSGI-KLHYVGSIFHRIVKNAWVQG-GDIVA
          D.SI...P.GRLVFELYC.TCPKTC.N.Q..C.GKA.FSQSGI..L.YV.S.FHRI..NAW.QG.G....
Retrocopy DVSIDLYPTGRLVFELYCDTCPKTCQNVQLWCPGKARFSQSGI<RLPYVSSVFHRIIENAWIQG<GVAAK

Parental  GKGDGGESIYGPTFEDESFSIPHNKRGVLGMVNKGRHSNGSQFYITLQSAPYLDKKYVAFGQLVEGTDVL
          G.G..G.SI..PTFEDESFSIP.NK.G.LGMVNKG..S.GS.FY.TL.SA..LD.K.VA.GQL.E.T.VL
Retrocopy GDG--GQSISVPTFEDESFSIPRNKMGFLGMVNKGCPSSGS*FYGTLPSAL*LDTKHVALGQLTEETEVL

Parental  QQLELVPTENERPIQQCTIIDSGNVYA
          QQL.LV.TEN.RPI.QCTIIDSGN..A
Retrocopy QQLALVTTENDRPI*QCTIIDSGNFHA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2374 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000003789	1 retrocopy	retro_mluc_2374 ,
Myotis lucifugus	ENSMLUG00000009317	1 retrocopy	retro_mluc_1667,