RetrogeneDB ID:

retro_mluc_237

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429767:20230637..20231015(+)
Located in intron of:ENSMLUG00000000847
Retrocopy
information
Ensembl ID:ENSMLUG00000024588
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000023871
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_237
ATGCTGCGTCCCAAGGCTCTGACCCAGGTGCTAAGCCAAGCCAACACTGGAGGTGTCCAGAGCACCTTGCTGCTGAATAA
CGAGGGATCTCTGCTGGCCTACTCTGGCTACGGGGACACTGACGCACGGGTCACCGCAGCCATCGCCAGTAACATCTGGG
CCGCTTACGACCGCAACGGGAACCAAGCATTTAATGAAGACAATCTCAAATTCATCCTCATGGACTGCATGGAGGGCCGT
GTAGCCATCACCCGAGTGGCCAACCTTCTGCTGTGTATGTACGCCAAGGAGACTGTTGGCTTCGGAATGCTCAAGGCGAA
GGCCCAGGCCTTGGTGCAGTACCTGGAGGAGCCCCTCACCCAAGTAGCAGCATCGTAA

ORF - retro_mluc_237 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLK
MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLK
RetrocopyMLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLK
ParentalFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS
FILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS
RetrocopyFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.