RetrogeneDB ID: retro_mluc_2331

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430221:574970..575729(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024379
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: C3ORF37
• Ensembl ID: ENSMLUG00000010630
• Aliases: None
• Description: None

Sequence

>retro_mluc_2331
CTTGTGGAGAAACGGTCCTTCAAGGTGCCTCTGGGAAAGGGAAGACGCTGTGTTGTTCTAGCAGATGGATTCTATGAGTG
GCAGCGATGTCAGAACACAAGCCACAGGCAGCCATACTTCATCTACTTTCCTCAAATCAAAACAGAAAAGTCAAGCAGCA
TTGGTGCTGCAAGTAGTCCTGAGGACTGGGAGAAAGTTTGGGACAACTGGAGGCTACTAACAATGGCCGGGATCTTTGAC
TGCTGGGAGCCACCACAGGGAGGAGACTGCCTGTATTCCTACACCATCATCACAGTGGATTCCTGCAAAGGCTTGAATGA
CATCCACCATAGGATGCCTGCCATATTAGATGGAGAGGAGGCAGTCTCTAAATGGCTTGATTTTGGTGAGGTCTCAACTC
AGGAAGCTCTGAAGTTAATCCAGACCTCAGAAAACATCACCTTCCATCCAGTCTCTACCGTGGTGAACAACTCCCGAAAC
AACACTCCTGAGTGTCTGGCTCCTGTTGGCTTAGAGGTCAAAAAGGAGTCCAAGGCAAGTGGCAGCAGCCAGAAGATGTT
GCAGTGGCTGGCCACAAAGTCACCCAAAAAGGAAGACCCCAAAACACCCCAAAAGGCAGAGCCAGATGTGCCCCAGTGGT
CCAGCCAGTTCCTGCGGAAGAGCCCATTCCCTACCAAGAGAGGAGGTGCAGGATGTCTGGAGCGATGGCTGAAACAGGAG
AAGGAGGAAGAGCCAGTGGCCAAGCGACCTCACAACCAG

Alignment

ORF - retro_mluc_2331 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.21 %
• Parental protein coverage: 71.47 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IMEKRSFKVPLGKGRRCVVLADGFYEWQRCQNTSHRQPYFIYFPQIKTEKSSSIGAASSPEDWEKVWDNW
          ..EKRSFKVPLGKGRRCVVLADGFYEWQRCQNTSHRQPYFIYFPQIKTEKSSSIGAASSPEDWEKVWDNW
Retrocopy LVEKRSFKVPLGKGRRCVVLADGFYEWQRCQNTSHRQPYFIYFPQIKTEKSSSIGAASSPEDWEKVWDNW

Parental  RLLTMAGIFDCWEPPQGGDCLYSYTIITVDSCKGLNDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKLI
          RLLTMAGIFDCWEPPQGGDCLYSYTIITVDSCKGLNDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKLI
Retrocopy RLLTMAGIFDCWEPPQGGDCLYSYTIITVDSCKGLNDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKLI

Parental  QTSENITFHPVSTVVNNSRNNTPECLAPVGLEVKKESKASGSSQKMLQWLATKSPKKEDPKTPQKAEPDV
          QTSENITFHPVSTVVNNSRNNTPECLAPVGLEVKKESKASGSSQKMLQWLATKSPKKEDPKTPQKAEPDV
Retrocopy QTSENITFHPVSTVVNNSRNNTPECLAPVGLEVKKESKASGSSQKMLQWLATKSPKKEDPKTPQKAEPDV

Parental  PQWSSQFLRKSPFPTKRGGAGCLERWLKQEKEEEPVAKRPHNQ
          PQWSSQFLRKSPFPTKRGGAGCLERWLKQEKEEEPVAKRPHNQ
Retrocopy PQWSSQFLRKSPFPTKRGGAGCLERWLKQEKEEEPVAKRPHNQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2331 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000030930	1 retrocopy	retro_btau_262,
Myotis lucifugus	ENSMLUG00000010630	1 retrocopy	retro_mluc_2331 ,