RetrogeneDB ID:

retro_mluc_2252

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430147:1074529..1075088(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:VDAC2
Ensembl ID:ENSMLUG00000007500
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_2252
CCCACGGCCTTGCCATGGCCACCAGCACATAGAGCTGCACATGCTAGAAATCTTTTCAAAAACAAATTTGGTTTTGGGTT
GATGAAACTGGGTGTAAAACAAAGTTATACAGTGACATGGAATTCTCAACACCTGGTTCATCTCATACAGACACTGGTAA
AGTTACTGGGACCTTGGAGACCTAACATAAATGGTGTGAATGTGGCCTCCTTTCACAGGGAATGGAACACTGACGACACT
GGGAACAGAAATCTCAATTGAAGACTAGATTTGTCACAGCTTGAAACTGACATTTAATACCACCTCTTCACCAAGCCCGG
GAAAGAAAAGTGGTAAAATCAAGTCTTCTCACAAGAGGGAGTGTGTAAACCTTGGATGTGATGTTGACTTTGATTGTGCT
GGACCTGCGATCCATGGTTCATCTGTCTCTGGTTGTGAGGGCTGGCTTGCTGGGTACCAGATGACCCTTGACAGTGCCAG
ATCAAAGCTGACAAGGACTCGCTTTGCGGTGGGCTTCAGGACTGGGGGCTTCCAGCTGCACACTGATGTCAATGATGGG

ORF - retro_mluc_2252 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70. %
Parental protein coverage: 63.95 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVK-TKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEYG
P...P...A.....AR..F...FGFGL.KL.VK.TK..S..EFST.GSS.TDTGKVTGTLET..KWCE.G
RetrocopyPTALPWPPAHRAAHARNLFKNKFGFGLMKLGVK<TKLYSDMEFSTPGSSHTDTGKVTGTLET*HKWCECG
ParentalLT-FTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDFDFAGPA
L..FT....T..TLGTEI.IED.IC..LKLTF.TT.SP..GKKSGKIKSS.KREC.NLGCDVDFD.AGPA
RetrocopyLL<FTGN-GTLTTLGTEISIED*ICHSLKLTFNTTSSPSPGKKSGKIKSSHKRECVNLGCDVDFDCAGPA
ParentalIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDG
IHGS.V.G.EGWLAGYQMT.DSA.SKLTR..FAVG.RTG.FQLHT.VNDG
RetrocopyIHGSSVSGCEGWLAGYQMTLDSARSKLTRTRFAVGFRTGGFQLHTDVNDG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide