RetrogeneDB ID: retro_mluc_2245

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430143:801831..802548(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPS5
• Ensembl ID: ENSMLUG00000003183
• Aliases: None
• Description: None

Sequence

>retro_mluc_2245
TTGAACAGGGGTCAGATTATCGATGAAGTGCGCAGTAGCCGCAGTAGCCTCCCATTGCCTGGTCTGAATGTCCCTCCTAG
GTGGGATGGAGCTGTACAAACCATTGCCCAAAGCAGCAAGAAGAGCAGGAGAAGGCGGAAGCTGACATGGTCCAGCAGAG
AGAAGAGTGGGACAGGAAGAGGAAGAGGAAGGTCAAGCTGGAGCGAAGCTGGAGTGGAAGCATAATTCAAAGTCTTGGCC
CTCCCGCCCCCGGTCCCAGTGGAGAAACATATGATGATTTTAATACCAGGATACTTGAGGTAAGAAATGGTTTCAATATG
ACAGCAAAAGAGGGAAGAAGGAGATCAGTCCGTGCCCTGGTTGCTGTGGGGAATGGCAAAGGAGCCACAGGTTTTGCCAC
TGGAAAAGCCACTGAACCATGGATGCTTCCAGAAAAGCAAAGAACAGAGCAGTTCACTCTTTGCATTATACAGAACGCTA
TGAAGACCGTGTGATATCCCATGGGATCCCTTTAACATTTCATAGGACACATATCAAGATGAAGAAACAACCCAGAGGCC
ATGGCCTCTGCTGCCACCCGGCCATCATCACCGTCTGCCCCTCACTGGCATGGAAGACGGGTGCGCCAAGGTCTCGGGGT
CCCTCACATGCTCACCTCACCTGGGCCTCTTCCACGAGCTCTCTCACCAGGAAACCCACCAACAGCTGGCTGGGAAG

Alignment

ORF - retro_mluc_2245 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.02 %
• Parental protein coverage: 55.92 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LNRGQIIGE---GRSGFLWPGLNVPLMRDGAVQTIAQRSK-EEQEKVEADMFQQREEWERKRKMKVKRER
          LNRGQII.E....RS....PGLNVP...DGAVQTIAQ.SK.EEQEK.EADM.QQREEW.RKRK.KVK.ER
Retrocopy LNRGQIIDEVRSSRSSLPLPGLNVPPRWDGAVQTIAQSSK<EEQEKAEADMVQQREEWDRKRKRKVKLER

Parental  GWSGNSWGGVSLGPPDPGPNGETYDDFDTRILEVRNVFNMTAKEGRKKSVRVLVAVGNGRGAAGFAIGKA
          .WSG..........P..GP.GETYDDF.TRILEVRN.FNMTAKEGR..SVR.LVAVGNG.GA.GFA.GKA
Retrocopy SWSGSIIQSLGPPAP--GPSGETYDDFNTRILEVRNGFNMTAKEGRRRSVRALVAVGNGKGATGFATGKA

Parental  TD-RADAFQKMAKNRAVHYLHYIERYEDHTIYHDISLRFKRTHIKMKKQPRGYGLRCHRAIITIC-RLIG
          T....DA..K.AKNRAVH.LHY.ERYED..I.H.I.L.F.RTHIKMKKQPRG.GL.CH.AIIT.C..L.G
Retrocopy TE<TMDASRK-AKNRAVHSLHYTERYEDRVISHGIPLTFHRTHIKMKKQPRGHGLCCHPAIITVC<PLTG

Parental  IKDMYAKVSGSVNMLNLTRGLFHGLSCQETHQQLADK
          ..D..AKVSGS........GLFH.LS.QETHQQLA.K
Retrocopy MEDGCAKVSGSLT-CSPHLGLFHELSHQETHQQLAGK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2245 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000009757	1 retrocopy	retro_amel_1242,
Gorilla gorilla	ENSGGOG00000001750	1 retrocopy	retro_ggor_2139,
Myotis lucifugus	ENSMLUG00000003183	1 retrocopy	retro_mluc_2245 ,
Macaca mulatta	ENSMMUG00000016239	2 retrocopies	retro_mmul_2110, retro_mmul_2251,
Mus musculus	ENSMUSG00000027374	1 retrocopy	retro_mmus_2014,