RetrogeneDB ID: retro_mluc_2231

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430131:692412..692944(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024941
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000003975
• Aliases: None
• Description: None

Sequence

>retro_mluc_2231
CAGATGTTCCAGAAAACAGGCAAACGTGTTTCATGGAGTGGACAGAACCTGGCAGACAGCTCTTAGTCTCAAGGCAATGA
GGGCTGCGATGGTGGCCTAATGGATGATGCCTTCTATATGCTGAGGACAGCAAAGGCCTGGACTCAGAGGAATCCTATGC
ATATCACGTAAGGAATGAATCCTGCAAAAACAAGCCTGGGTTTTCTGCTGCCAATGACACTGGCTTTGTGGACACCCATG
TGCAGGAGAAGCCCCTTACGAAGGCAAGTGTGGGGCCATCTCTGTTGCTATAAATGTGAGCTGTAGATGTTTCCAGTTTT
ATGCAAAAGGCATTTATTATGAACCAGAATGCAGCAGCAAAGACCTGCGTCATGGTGTTCTGGTGGTTGGCTACGGCTTT
GAAGGAGCAGAACTGCATAAGTATTGGATTGTCAAGAAAGGGGGTATAGCTTGGGGCATGGGTGTCTACATAAAAATGGT
CAAAGACCGGAACAACCACTTTGGAATTGGCACCATGGTCAGCGAGGCTACT

Alignment

ORF - retro_mluc_2231 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.24 %
• Parental protein coverage: 53.2 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QMFRKTGKLVSLSEQNLVDCSRAQGNKGCRGGLMDNAFQ-YVKDNKGLDTEESYPYSGTDDTCKYKPEFS
          QMF.KTGK.VS.S.QNL.D.S..QGN.GC.GGLMD.AF..Y..D.KGLD.EESY.Y......CK.KP.FS
Retrocopy QMFQKTGKRVSWSGQNLADSS*SQGNEGCDGGLMDDAFY<YAEDSKGLDSEESYAYHVRNESCKNKPGFS

Parental  AANDTGFVDIHKNERSLMKAVASVGP-ISVALDASLESFQFYEKGIYYDPDCSSEDLNHGVLVVGYGFEG
          AANDTGFVD.H..E..L.KA..SVGP.ISVA...S...FQFY.KGIYY.P.CSS.DL.HGVLVVGYGFEG
Retrocopy AANDTGFVDTHVQEKPLTKA--SVGP<ISVAINVSCRCFQFYAKGIYYEPECSSKDLRHGVLVVGYGFEG

Parental  VEMDNNKYWIVKNSWGTKWGMDGYIKMAKDLDNHCGIASLASMAS
          .E....KYWIVK...G..WGM..YIKM.KD..NH.GI....S.A.
Retrocopy AEL--HKYWIVKKG-GIAWGMGVYIKMVKDRNNHFGIGTMVSEAT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2231 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000019810	1 retrocopy	retro_dord_197,
Macropus eugenii	ENSMEUG00000002168	2 retrocopies	retro_meug_1349, retro_meug_1567,
Macropus eugenii	ENSMEUG00000014293	1 retrocopy	retro_meug_1873,
Macropus eugenii	ENSMEUG00000016209	2 retrocopies	retro_meug_159, retro_meug_1727,
Myotis lucifugus	ENSMLUG00000003975	1 retrocopy	retro_mluc_2231 ,
Myotis lucifugus	ENSMLUG00000025440	1 retrocopy	retro_mluc_2399,
Macaca mulatta	ENSMMUG00000013861	1 retrocopy	retro_mmul_1669,
Monodelphis domestica	ENSMODG00000002844	1 retrocopy	retro_mdom_1101,
Petromyzon marinus	ENSPMAG00000003453	1 retrocopy	retro_pmar_7,
Tarsius syrichta	ENSTSYG00000002858	2 retrocopies	retro_tsyr_150, retro_tsyr_603,