RetrogeneDB ID: retro_mluc_2204

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430099:865014..865578(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CAPZB
• Ensembl ID: ENSMLUG00000012115
• Aliases: None
• Description: None

Sequence

>retro_mluc_2204
GAGTATGGCCCTCCCTCGGTAGATGGGGTCATGCCTTCTGCTCCGCTGAGGAAGCTGGAGGTGGAAGCCAACAGTGCCTT
TGACCTGTATGGAGACCTTGTATTTTGAAGGCGGCGTCTCATCTGTCTACCTCTGGGATCTGGACCCTGGCTTTGCTGGA
GTGATCCGCATAAAGAAGGCTGGAGACTGATCAAAGCAGACCAAAGGCTCCTGGGATTCCGTCCACGTGGTGGAAGTGCA
GGAGAAATCCCAGGGCCGCACCGCCCATTACAAGCTGACCTCCTCAGCGATGCTGTGGCTGCAAACCAACAAGTCAGGCT
CTGGCACCATGAAGCTCAGAGGCGGCCGCACCAGACAGATGGAGAAGACGACACTGTGAGCGACGCTTCGCCACATGTAG
CCAATACCAGGCGCCTGGCAGAGGACATGGAAAACAAAGTCAGAAGTGCGCTGAACGAGGTCTAATTTGAAAAAACCAAA
GACATTGTCAATGGGCTGAGGTCTTTGCAGACTTTTGCAGACAAATCAAAACAAGAAGCTCTTAAGAATGACCTGCTGGA
GGCT

Alignment

ORF - retro_mluc_2204 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80. %
• Parental protein coverage: 69.12 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  KYDPPLEDGAMPSARLRKLEVEANNAFDQYRD-LYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSKKIKG
          .Y.PP..DG.MPSA.LRKLEVEAN.AFD.Y.D.LYFEGGVSSVYLWDLD.GFAGVI.IKKAGD.SK..KG
Retrocopy EYGPPSVDGVMPSAPLRKLEVEANSAFDLYGD>LYFEGGVSSVYLWDLDPGFAGVIRIKKAGD*SKQTKG

Parental  CWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEK-DETVSDSSPHIANIGR
          .WDS.HVVEVQEKS.GRTAHYKLTS..MLWLQTNKSGSGTM.L.G..TRQMEK.D.TVSD.SPH.AN..R
Retrocopy SWDSVHVVEVQEKSQGRTAHYKLTSSAMLWLQTNKSGSGTMKLRGGRTRQMEK<DDTVSDASPHVANTRR

Parental  LVEDMENKIRSTLNEIYFGKTKDIVNGLRSVQTFADKSKQEALKNDLVEA
          L.EDMENK.RS.LNE..F.KTKDIVNGLRS.QTFADKSKQEALKNDL.EA
Retrocopy LAEDMENKVRSALNEV*FEKTKDIVNGLRSLQTFADKSKQEALKNDLLEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2204 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000006715	1 retrocopy	retro_cjac_1184,
Dasypus novemcinctus	ENSDNOG00000018644	3 retrocopies	retro_dnov_1168, retro_dnov_1719, retro_dnov_2663,
Macropus eugenii	ENSMEUG00000002018	1 retrocopy	retro_meug_1958,
Myotis lucifugus	ENSMLUG00000012115	2 retrocopies	retro_mluc_1254, retro_mluc_2204 ,
Oryctolagus cuniculus	ENSOCUG00000014711	1 retrocopy	retro_ocun_1213,