RetrogeneDB ID: retro_mluc_22

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429883:1069548..1070886(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023849
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000011281
• Aliases: None
• Description: None

Sequence

>retro_mluc_22
ATGCCGACCCGGGCAGAGGACTACGACGTGCTGCACACCATTGGCATCGGCTCCTATGGCCGCTGCCAGAAGATCCGGAG
GAAGAGCGATGGCAAGATATTAGTTTGGAAAGAACTTGACTATGGCTCCAAGACAGAAGCTGAGAAACAAATGCTTGTTT
CTGAAGTGAATTTGCTTCGTGAACTGAAGCATCCAAACATCGTCCGTTACTATGATCGCATTATTGACCGAACCAACACA
ACACTGTACATTGTAATGGAATATTGCGAAGGAGGGGACCTGGCTAGTATAATTACAAAGGGAACCAAGGAAAGACAATA
CTTGGAGGAAGAGTTTGTTCTTCGAGTGATGGCTCAGTTGACTCTGGCCCTAAAGGAATGTCACAGACGAAGTGATGGTG
GTCATACGGTGCTCCATGGGGATCTGAAACCAGCCAATGTTTTCCTGGATGGCAAGCAAAACGTTAAGCTTGGAGACTTC
GGGCTAGCTAGAATATTAAACCAGGATACCAGTTTTGCAAAAACATTTGTTGGCACTCCTTATTACATGTCTCCTGAGCA
GATGAGTCGCATATCCTACAATGAGAAATCGGATATCTGGTCACTGGGCTGTTTGATATATGAGTTGTGTGCATTAATGC
CTCCATTTACAGCTTCCAACCAGAAAGAATTAGCTGGGAAGATCCGAGAAGGCAAATTCAGGCGAATTCCATATTGTTAC
TCTGATGAGTTGAATGACATCATTACAAGGATGTTAAATTTAAAGGACTACCATCGACCCTCTGTTGAAGAAATTCTGGA
GAGCCCTTTGATAGCAGACTTGGTTGCAGAAGAGCAGAGGAGAAATCCTGAGAGAAGGGGGCGACAATCTGGAGAACCAG
AAAAGTTGCAGGATTCTAACACTGTATTAAGTGAGCTGAAACTGAAGGAAATACAGTTGCAGGAGCGAGAGCGAGCCCTC
AAAGCCAGAGAGGAAAGACTGGAGCAGAAGGAACGTGAGCTTTGTGTTCGTGAGAGACTGGCGGAGGACAAATTGGCGAG
AGCGGAAAGTCTGATGAAGAACTACAGCCTGCTGAAGGAGCAGAGGCTCCTGTCCCTGGCCAGTGGTCGAGAACTGTTAG
CTCTTCCATCCTCAATACTTAAGAAGAAAGTTCATTTCAGTGGAGAGAGTAAGGAGAGTGTCCGGAGGAGTGAGAACTCT
GAGAGCCAGCTCTCCTCCAAAGCCAAGTGCAAAGACCTGAAGAAGAAGCTCCATGCTGCCCAGCTGCGCACGCAAGCCCT
GGCGGACATTGAGCAAACGTACCAGCTGAAAAGCAGACAGATCCTGGGCATGCGCTAG

Alignment

ORF - retro_mluc_22 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.4 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPTRAEDYEVLHTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRY
          MPTRAEDY.VLHTIG.GSYGRCQKIRRKSDGKILVWKELDYGS.TEAEKQMLVSEVNLLRELKHPNIVRY
Retrocopy MPTRAEDYDVLHTIGIGSYGRCQKIRRKSDGKILVWKELDYGSKTEAEKQMLVSEVNLLRELKHPNIVRY

Parental  YDRIIDRTNTTLYIVMEYCEGGDLASIITKGTKERQYLEEEFVLRVMAQLTLALKECHRRSDGGHTVLHR
          YDRIIDRTNTTLYIVMEYCEGGDLASIITKGTKERQYLEEEFVLRVMAQLTLALKECHRRSDGGHTVLH.
Retrocopy YDRIIDRTNTTLYIVMEYCEGGDLASIITKGTKERQYLEEEFVLRVMAQLTLALKECHRRSDGGHTVLHG

Parental  DLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMSRMSYNEKSDIWSLGCLMYELC
          DLKPANVFLDGKQNVKLGDFGLARILN.DTSFAKTFVGTPYYMSPEQMSR.SYNEKSDIWSLGCL.YELC
Retrocopy DLKPANVFLDGKQNVKLGDFGLARILNQDTSFAKTFVGTPYYMSPEQMSRISYNEKSDIWSLGCLIYELC

Parental  ALMPPFTAFNQKELAGKIREGKFRRIPYRYSDELNDIITRMLNLKDYHRPSVEEILESPLIADLVAEEQR
          ALMPPFTA.NQKELAGKIREGKFRRIPY.YSDELNDIITRMLNLKDYHRPSVEEILESPLIADLVAEEQR
Retrocopy ALMPPFTASNQKELAGKIREGKFRRIPYCYSDELNDIITRMLNLKDYHRPSVEEILESPLIADLVAEEQR

Parental  RNPERRGRRSGEPEKLQDSNPVLSELKLKEIQLQERERALKAREERLEQKERELCVRERLAEDKLARAES
          RNPERRGR.SGEPEKLQDSN.VLSELKLKEIQLQERERALKAREERLEQKERELCVRERLAEDKLARAES
Retrocopy RNPERRGRQSGEPEKLQDSNTVLSELKLKEIQLQERERALKAREERLEQKERELCVRERLAEDKLARAES

Parental  LMKNYSLLKEQRLLSLASGPELLALPSSILKKKVHFSGESKENVLRSENSESQLSSKAKCKDLKKRLHAA
          LMKNYSLLKEQRLLSLASG.ELLALPSSILKKKVHFSGESKE.V.RSENSESQLSSKAKCKDLKK.LHAA
Retrocopy LMKNYSLLKEQRLLSLASGRELLALPSSILKKKVHFSGESKESVRRSENSESQLSSKAKCKDLKKKLHAA

Parental  QLRAQALADIEQTYQLKSRQILGMR
          QLR.QALADIEQTYQLKSRQILGMR
Retrocopy QLRTQALADIEQTYQLKSRQILGMR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_22 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000117650	4 retrocopies	retro_hsap_1301, retro_hsap_1385, retro_hsap_2317, retro_hsap_2538,
Gorilla gorilla	ENSGGOG00000005439	1 retrocopy	retro_ggor_1018,
Myotis lucifugus	ENSMLUG00000011281	1 retrocopy	retro_mluc_22 ,
Pan troglodytes	ENSPTRG00000001953	2 retrocopies	retro_ptro_1691, retro_ptro_890,
Rattus norvegicus	ENSRNOG00000004487	1 retrocopy	retro_rnor_2552,