RetrogeneDB ID: retro_mluc_218

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430324:504114..506271(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000013552
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: SLC5A2
• Ensembl ID: ENSMLUG00000011500
• Aliases: None
• Description: None

Sequence

>retro_mluc_218
ATGCGGGCTGTGCTGGAGACGGCAGACATTGCCGTAGTGGCCCTCTACTTTGTCCTGGTCCTGTGCATTGGCTTCTTTGC
CATGTGGAAGTCTAATAGGAGCACCGTGAGCGGATACTTCCTGGCCGGGCGCTCTATGACCTGGGTAGCGATTGGGGCCT
CTCTGTTTGTGAGCAACATTGGGAGTGAGCACTTCATTGGGCTGGCGGGATCTGGAGCGGCGAGTGGATTTGCCGTCGGT
GCGTGGGAGTTCAATGCCTTACTGCTGCTGCAGCTTCTGGGCTGGGTTTTCGTCCCGATTTACATCCGGTCGGGGGTGTA
CACCATGCCTGAGTACTTGTCCAAGCGCTTTGGTGGCCATAGGATTCAGGTCTATTTTGCAGCCTTGTCTCTGATTCTCT
ATATCTTCACCAAGCTCTCGGTGGATCTGTATTCAGGCGCCCTCTTTATCCAGGAATCTTTGGGTTGGAACCTGTATGTG
TCTGTCATCCTGCTCATTGGCATGACTGCCTTGCTGACTGTCACCGGAGGCCTTGTTGCGGTGATCTACACAGACACTCT
CCAGGCGCTGCTCATGATCGTTGGGGCCCTCACACTTATGGTTTTTAGTATGATGGAGGTTGGCGGGTTTGAGGAAGTTA
AGAGAAGGTACATGTTGGCCTCACCCAATGTCACTTCCATCTTGTTGACATACAACCTGTCCAACACCAATTCTTGTAAA
GTCCACCCTAAGAAAAATGCACTGAAAATGTTGCGGAGTGCGACAGATGAAGATGTGCCTTGGCCTGGATTCCTTCTCGG
GCAGACCCCAGCCTCCGTGTGGTACTGGTGCGCCGACCAGGTCATCGTGCAGAGGGTACTGGCAGCTAAAAACATTTCGC
ACGCCAAAGGCTCCACTCTGATGGCTGGCTTCTTGAAGCTTCTGCCCATGTTCATCATTGTGGTCCCAGGCATGATCTCC
AGGATCCTGTTTGCGGATGACATAGCTTGCATCAACCCGGAGCACTGCATGCAGGTGTGCGGCAGCAGGGCCGGGTGCTC
GAACATCGCGTACCCGCGCCTGGTCATGAGGCTGGTCCCCGTGGGCCTCCGGGGCCTGATGATGGCGGTGATGATCGCGG
CTCTGATGAGTGACTTGGACTCGATCTTTAACAGCGCCAGCACCATCTTCACCCTGGACGTGTACAAACTCATCCGCAAG
AACGCCAGCTCCCGGGAGCTCATGATCGTGGGGAGGGTATTTGTGGCTTTCATGGTGGTGATCAGCATCGCGTGGGTGCC
AATCATCGTGGAGATGCAAGGAGGCCAGATGTACCTTTACATTCAGGAGGTGGCAGATTACCTGACGCCCCCCGTGGCGG
CCCTGTTCCTTCTGGCAATTTTCTGGAAGCGCTGCAATGAGCAAGGGGCTTTCTATGGTGGAGTGGCTGGCTTTGTTCTC
GGAGCAGTGCGCTTAATACTAGCCTTCACCTACCGGGTCCCGGAATGTGACCAGCCCGATAACAGGCCTGGCTTCATCAA
AGACATTCATTACATGTACGTGGCCACCGCGTTGTTTTGGGTCACTGGACTCATTACTGTAATTGTCAGCCTTCTCACGG
CACCCCCCACGAAGGAGCAAATTCGTACCACCACCTTTTGGTCTAAGAAGAGCGTGGTGGTGGAGGAGAGCTGCTCCTCG
AAAGACGAACCATACAAAATGCAGGAGAAGAGCATCCTGCGATGCAGTGAGAACAGTGAGCCCATCAACCACATCATTCC
CAATGGGAAGTCTGAAGACAGCATTAAGGGCCTTCAGCCTGAAGATGTTAATCTCTTGGGGACCTGCAGGGAGGAGGGCA
ACCCCGCAGCTTCCTTAGGTCATTCAGAGGCAGAAACACCAGTAGACGCTTATTCCAATGGGCAGGCAGCACTCATGGGT
GAAAAAGAGAGAAAGAAAGAAGCAGAGGATGGAGGCCGCTGCTGCAAGTTAATAGATTGGTTCTGTGGCTTTAAAAGTAA
GAGCCTCAGCAAGAGGAGTCTCAGAGACCTGATGGAGGAGGAGGCGGTCTGCTTACAGATGCTGGAAGAGCCTCCACATA
TTAAACTAATACTAGATATTGGACTTTTTGCTGTGTGTTCACTTGGAATTTTCATGTTTGTTTATTTTTCCTTATGA

Alignment

ORF - retro_mluc_218 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.89 %
• Parental protein coverage: 79.14 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ADIVVIAAYFLLVIGVGLWSMCRTNRGTVGGYFLAGRSMVWWPVGASLFASNIGSGHFVGLAGTGAASGL
          ADI.V.A.YF.LV...G...M...NR.TV.GYFLAGRSM.W...GASLF.SNIGS.HF.GLAG.GAASG.
Retrocopy ADIAVVALYFVLVLCIGFFAMWKSNRSTVSGYFLAGRSMTWVAIGASLFVSNIGSEHFIGLAGSGAASGF

Parental  AVAGFEWNALFVVLLLGWLFVPVYLTAGVITMPQYLRKRFGGHRIRLYLSVLSLFLYIFTKISVDMFSGA
          AV...E.NAL....LLGW.FVP.Y...GV.TMP.YL.KRFGGHRI..Y...LSL.LYIFTK.SVD..SGA
Retrocopy AVGAWEFNALLLLQLLGWVFVPIYIRSGVYTMPEYLSKRFGGHRIQVYFAALSLILYIFTKLSVDLYSGA

Parental  VFIQQALGWNIYASVIALLGITMVYTVTGGLAALMYTDTVQTFVILGGACILMGYAFHEVGGYSGLFDKY
          .FIQ..LGWN.Y.SVI.L.G.T...TVTGGL.A..YTDT.Q......GA..LM.....EVGG.......Y
Retrocopy LFIQESLGWNLYVSVILLIGMTALLTVTGGLVAVIYTDTLQALLMIVGALTLMVFSMMEVGGFEEVKRRY

Parental  LGAMTSL-TVSEDPAVGNISSSCYQPRPDSYHLLRDPVTGDLPWPALLLGLTIVSGWYWCSDQVIVQRCL
          ..A..............N..S....P.......LR.....D.PWP..LLG.T..S.WYWC.DQVIVQR.L
Retrocopy MLASPNVTSILLTYNLSNTNSCKVHPKKNALKMLRSATDEDVPWPGFLLGQTPASVWYWCADQVIVQRVL

Parental  AGKNLTHIKAGCILCGYLKLMPMFLMVMPGMISRILYPDEVACVVPEVCKRVCGTEVGCSNIAYPRLVVK
          A.KN..H.K......G.LKL.PMF..V.PGMISRIL..D..AC..PE.C..VCG...GCSNIAYPRLV..
Retrocopy AAKNISHAKGSTLMAGFLKLLPMFIIVVPGMISRILFADDIACINPEHCMQVCGSRAGCSNIAYPRLVMR

Parental  LMPNGLRGLMLAVMLAALMSSLASIFNSSSTLFTMDIYTRLRPRAGDRELLLVGRLWVVFIVAVSVAWLP
          L.P.GLRGLM.AVM.AALMS.L.SIFNS.ST.FT.D.Y...R..A..REL..VGR..V.F.V..S.AW.P
Retrocopy LVPVGLRGLMMAVMIAALMSDLDSIFNSASTIFTLDVYKLIRKNASSRELMIVGRVFVAFMVVISIAWVP

Parental  VVQAAQGGQLFDYIQAVSSYLAPPVSAVFVLALFVPRVNEKGAFWGLIGGLLMGLARLIPEFSFGSGSCV
          .....QGGQ...YIQ.V..YL.PPV.A.F.LA.F..R.NE.GAF.G...G...G..RLI..F......C.
Retrocopy IIVEMQGGQMYLYIQEVADYLTPPVAALFLLAIFWKRCNEQGAFYGGVAGFVLGAVRLILAFTYRVPECD

Parental  RPSACPALLCGVHYLYFAIVLFVCSGLLTIVISLCTAPIPRKHLHRLVFSLRHSKEEREDLDAEE
          .P...P......HY.Y.A..LF...GL.T...SL.TAP..........F....S....E......
Retrocopy QPDNRPGFIKDIHYMYVATALFWVTGLITVIVSLLTAPPTKEQIRTTTFWSKKSVVVEESCSSKD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_218 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000011926	1 retrocopy	retro_acar_109,
Ailuropoda melanoleuca	ENSAMEG00000016218	1 retrocopy	retro_amel_32,
Bos taurus	ENSBTAG00000010096	1 retrocopy	retro_btau_287,
Canis familiaris	ENSCAFG00000016909	1 retrocopy	retro_cfam_157,
Felis catus	ENSFCAG00000001380	1 retrocopy	retro_fcat_110,
Latimeria chalumnae	ENSLACG00000007334	1 retrocopy	retro_lcha_35,
Loxodonta africana	ENSLAFG00000005737	1 retrocopy	retro_lafr_54,
Myotis lucifugus	ENSMLUG00000011500	1 retrocopy	retro_mluc_218 ,
Mus musculus	ENSMUSG00000030781	1 retrocopy	retro_mmus_200,
Pteropus vampyrus	ENSPVAG00000012531	1 retrocopy	retro_pvam_13,
Tursiops truncatus	ENSTTRG00000012500	1 retrocopy	retro_ttru_2,