RetrogeneDB ID: retro_mluc_217

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429947:1583517..1584690(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030378
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000001847
• Aliases: None
• Description: None

Sequence

>retro_mluc_217
ATGAGGGGCGACAGAGGCCGAGGTCGTGGCGGGTGCTTTGGTTCCCGAGGAGGCCCGGGAGGAGGGTTCAGGCCCTTTGT
ACCCCACATCCCATTTGATCTCTATTTGTGTGAAATGGCCTTCCCTCGGGTTAAGCCAGCACCTGATGAATCTTCCTTCA
GTGAGGCATTGCTGAAAAGAAATCAGGACCTTGCTCCTAATTCTGCTGAACAGGCCTCTATCCTTTCTCTGGTGACAAAA
ATAAACAATGTGATTGACAATTTGATTGTGGCTCCAGGGACATTTGAAGTGCAAATTGAAGAAGTGCGACAGGTTGGATC
ATATAGAAAGGGAACAATGACTACAGGGCATAATGTGGCTGACCTGGTGGTAATCCTAAAGATTTTGCCAACGTTGGAAG
CTGTTGCTGCCCTAGGGAACAAAGTCGTGGAAAGCCTAAGAGCACAGGATCTTTCTGAAGTTTTGACCATGCTGACCAAT
GAAACTGGCTTTGAGATCAGTTCTTCTCATGCTACAGTGAAGATTCTCATTACAACAGTGCCACCCAATCTCCGAAAACT
GGATCCAGAACTCCATTTGGACATCAAGGTGTTGCAGAGTGCCTTAGCAGCCATCCGACATGCTCGCTGGTTTGAAGAAA
ATGCTTCTCAGTCCACAGTTAAAGTTCTCATCAGACTTCTGAAGGACCTGAGGATTCGGTTTCCTGGCTTTGAGCCCCTC
ACACCCTGGATCCTTGACCTACTCGGGCACTATGCTGTGATGAACAACCCCACCAGACAGCCTTTGGCCCTCTATGTGGC
ATACAGGCGTTGCTTGCAGATTCTGGCTGCAGGACTGTTCTTGCCAGGGTCAATGGGTATCACAGACCCCTGTGAGAGTG
GCACCTTCAGAGTACACACGGTCATGACTTTGGAACAGCAGGACATGGTCTGCTACACAGCTCAGACTCTGGTCCGAATC
CTCTCACATGGTGGCTTTAGGAAGATCCTTGGCCAGGAGGGTGATGCCAGCTATCCTGCTTCTGAAATATCTACCTGGGA
TGGAGTGATAGTGACACCGTCAGAAAAGGCTTATGAGAAGCCACCAGAGAAGAAGGAAGGGGAGGAAGTGGAGGAGAATA
CAGAAGAACCACCTCAAGCAGAGGAGGAGGAAAGCATGGAGACTCAGGAGTGA

Alignment

ORF - retro_mluc_217 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.43 %
• Parental protein coverage: 99.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RGDRGRGRGGRFGSRGGPGGGFRPFVPHIPFDFYLCEMAFPRVKPAPDESSFSEALLKRNQDLAPNSAEQ
          RGDRGRGRGG.FGSRGGPGGGFRPFVPHIPFD.YLCEMAFPRVKPAPDESSFSEALLKRNQDLAPNSAEQ
Retrocopy RGDRGRGRGGCFGSRGGPGGGFRPFVPHIPFDLYLCEMAFPRVKPAPDESSFSEALLKRNQDLAPNSAEQ

Parental  ASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNK
          ASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSY.KGTMTTGHNVADLVVILKILPTLEAVAALGNK
Retrocopy ASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYRKGTMTTGHNVADLVVILKILPTLEAVAALGNK

Parental  VVESLRAQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWF
          VVESLRAQD.SEVLTMLTNETGFEISSS.ATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWF
Retrocopy VVESLRAQDLSEVLTMLTNETGFEISSSHATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWF

Parental  EENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFL
          EENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLAL.VAYRRCLQILAAGLFL
Retrocopy EENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALYVAYRRCLQILAAGLFL

Parental  PGSMGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVIV
          PGSMGITDPCESG.FRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASY.ASEISTWDGVIV
Retrocopy PGSMGITDPCESGTFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYPASEISTWDGVIV

Parental  TPSEKAYEKPPEKKEGEEEEENTEEPPQGEEEESMETQE
          TPSEKAYEKPPEKKEGEE.EENTEEPPQ.EEEESMETQE
Retrocopy TPSEKAYEKPPEKKEGEEVEENTEEPPQAEEEESMETQE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_217 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 13 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000017530	1 retrocopy	retro_cfam_1358,
Erinaceus europaeus	ENSEEUG00000013100	1 retrocopy	retro_eeur_500,
Homo sapiens	ENSG00000143621	2 retrocopies	retro_hsap_1405, retro_hsap_2654,
Macropus eugenii	ENSMEUG00000003651	1 retrocopy	retro_meug_1174,
Microcebus murinus	ENSMICG00000013730	1 retrocopy	retro_mmur_206,
Myotis lucifugus	ENSMLUG00000001847	3 retrocopies	retro_mluc_1046, retro_mluc_217 , retro_mluc_2402,
Myotis lucifugus	ENSMLUG00000008365	1 retrocopy	retro_mluc_2581,
Macaca mulatta	ENSMMUG00000008149	1 retrocopy	retro_mmul_1516,
Oryctolagus cuniculus	ENSOCUG00000005430	1 retrocopy	retro_ocun_1216,
Pongo abelii	ENSPPYG00000000800	1 retrocopy	retro_pabe_2318,
Pan troglodytes	ENSPTRG00000001358	2 retrocopies	retro_ptro_1789, retro_ptro_963,
Ictidomys tridecemlineatus	ENSSTOG00000000667	1 retrocopy	retro_itri_130,
Tarsius syrichta	ENSTSYG00000012061	3 retrocopies	retro_tsyr_1448, retro_tsyr_1745, retro_tsyr_496,