RetrogeneDB ID: retro_mluc_2155

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430064:822914..823957(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030593
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000004172
• Aliases: None
• Description: None

Sequence

>retro_mluc_2155
CACATAGACATTTACACAGATGTAGACGAAGAGTTCAGCCAGGAAGCTGAATATGGTGGGCATGATCAGATAGATTTGTG
TGATGATGTCATCTCTCCATCCGAAAATAATGGAGATGCCCCAGAAGACCGGGATTACATGGATACTCCCCCACCAGCTG
TTGGTGATGATGTGGGTAAAGGAGCAGCACCAAATGTTGTCTATACATATACGGGAAAGAGAATTGCATTATATATTAGA
AATCTAACATGGTGGACAACAGATGAAGACTTAACTGAAGCACTGCATTCTTTGGGAGTAAATGATATTTTGGAGATAAA
GTTTTTTGAAAACCGAGCAAATGGCCAATCTAAGGGGTTTGCCCTTGTTGGTGTTGGATCTGAAGCATCCTCAAAAAAGT
TAATGGATCTGTTGCCTAAAAGAGAACTTCATGGTCAGAATCCTGTTGTAACTCCATGCAATAAACAGTTCCTGAGTCAA
TTTGAAATGCAGTCCAGGAAAACTACACAATCAGGACAAATGTCTGGGAAAGGTAAAGCTGTCCTCCAGGAGGCAGTTCA
CGTGCAGCATCAGCATTCCCACAAGGTGGTAGAGGACGGGGCTGTTTTCCAGGGGCTGTTCCTGGTGGGGACAGATTTCC
TGGGTCAGCAGGACCAGGAGGGCCACCCCCACCTCTTCCAGCTGGACAGACTCCATCATGTCCACCCTTAGGTTCTCCAG
GCCCACCTGGTCCACCAGGTCCACCTCCACCTGGTCAGGTTCTGCCTCCTCCTTTAGCTGGGCCTCCTAATCGAGGAGAT
CGCCCTCCACCGCCAGTTCTTTTTCCTGGACAACCTTTTGGGCAGCCTCCTTTGGGTCCGCTTCCGCCTGGTCCTCCACC
TCCAGTTCCAGGCTACAGTCCACCTCCAGGCCCCTTTCCACCTCATCCACCTGGTCCTCTTGGACCACCCCTTACACTTG
CTCCTCCTCCGCATCTTCCTGGACCACCTCCAGGTGCCCCACCGCCAGCTCCACATGTGAACCCAGCTTTCTTTCCTCCA
CCA

Alignment

ORF - retro_mluc_2155 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.2 %
• Parental protein coverage: 64.5 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  YVNIFLDLQPMKNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTY
          ...I..D......QEAEYGGHDQIDL.DDVISPS.NNGDAPEDRDYMDT.PP.VGDDVGKGAAPNVVYTY
Retrocopy HIDIYTDVDEEFSQEAEYGGHDQIDLCDDVISPSENNGDAPEDRDYMDTPPPAVGDDVGKGAAPNVVYTY

Parental  TGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK
          TGKRIALYI.NLTWWTTDEDLTEA.HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK
Retrocopy TGKRIALYIRNLTWWTTDEDLTEALHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK

Parental  RELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKA-GPPGGSSRA--AFPQGGRGRGRFPGAVPG
          RELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSG.GKA..PPGGSSRA..AFPQGGRGRG.FPGAVPG
Retrocopy RELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGKGKA<CPPGGSSRAASAFPQGGRGRGCFPGAVPG

Parental  GDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQP
          GDRFPG.AGPGGPPPP.PAGQTP..PPLG...........PPGQVLPPPLAGPPNRGDRPPPPVLFPGQP
Retrocopy GDRFPGSAGPGGPPPPLPAGQTPSCPPLGSXXXXXXXXXXPPGQVLPPPLAGPPNRGDRPPPPVLFPGQP

Parental  FGQPPLGPLPPGPPPPVPGYGPPPGP-PPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPP
          FGQPPLGPLPPGPPPPVPGY.PPPGP.PP...GP..PP....P.P..P..PP....P.PH....P...PP
Retrocopy FGQPPLGPLPPGPPPPVPGYSPPPGPFPPHPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHV--NPAFFPP

Parental  P
          P
Retrocopy P

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2155 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000007385	1 retrocopy	retro_mmur_1005,
Myotis lucifugus	ENSMLUG00000004172	3 retrocopies	retro_mluc_2155 , retro_mluc_2238, retro_mluc_2588,
Monodelphis domestica	ENSMODG00000007123	1 retrocopy	retro_mdom_1019,