RetrogeneDB ID: retro_mluc_2149

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430062:874741..876297(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OSBPL9
• Ensembl ID: ENSMLUG00000009199
• Aliases: None
• Description: Oxysterol-binding protein [Source:UniProtKB/TrEMBL;Acc:G1PD73]

Sequence

>retro_mluc_2149
AGTACTATGAATCCTGTAGAGGCAATATATCAACCTAGTCCCTTGGAGCCTGTGATCAACACAATGCCTCTTCAGACTGT
CTTACCTCCAGAACCCCGTCAGTTGTGTAAGTCAGAGCAGCATCCATCTTCCCTACCAGTTGGACCTGTATTCGCTACCT
TGGGACATCATCAGACTCCAACACCAAATAGTACAGGCAGTGGGCACTCACCACCTAGGAGCAGTCTAACTTCTCCAAGC
GATGTCAGCTTGTCTCCAAATACAGTCCAGAGTTCTCTTATTCTAGAGGTGAAGATGAATTCTATGACCCTGATGAATTT
CATCAAAGTGGCTCATCCCCAAAGTGCTTAATAGATTCCTCTGGATCTGCTTCTGTCTTAACCCATAATAGCTCAGGAAA
TAGTCTCTAGTATCTAGATACCGCAGAATCCATTAATTCTTCCTTGTTCAATGGAACAAGTGATGCTGACCTTCTCAATT
CCTATGATGAAAGAGATGATGAAGGGGAGGCAGGGCAAGTGGAAAAGCACAAGGGTGTTATCATGCATTTCTTGTCACAT
GTTAGGCTTGGAATGGATCTTACTAAGGTAGTTCACCCAACATTTATTCTTGAAAGAAGATCTTTTAGAAATGTATGCCG
ACTTTTTTGCACACCCAGACCTGTTTGTGAGCATTAGTGACCAAAAGGATGCCAGAGACTGAGTGGTTCAGGTTGTGAAA
TGGTACCTCTCAGCCTTTCATGCAGGAAGGAGAGGATCGGTTGCCAAAAAGCCATACAACCCCATTTTGGGCGAGGCCTT
TCAGTGTCACTGGACATTACCAAATGATACCGAAGAGGACACAGAGCTAGTTTCAGAAGGACCAGTTCCCGGGGGTTCCA
AAAACAGTGTAACATTCGTGGCTGAGCAAGTTTCCCATCCTCCACCCATTTCAGCCTTTTATGCTGAGTGTTTTAAGAAG
AAGATACAAGTCAGTGCTCATATCTGGACCAAATCAAAATTCCTGGGAATGTCAATTGGGGTCCACAGCATAGGGCAGGG
CTGTGTCTCATGCCTAGACCGTGACAACCATAACATTTTCACATTCCCCAGTGGTTATGGAAGGTCTGTCCTCACAGTGC
CCTGGGTGGAACTAGGTGGAGAATGCAATATTAATTGTTACAAACTGGCTATCGTGCAAATACTGTCTTCCACGTGAAAT
CTTTGTAAGATTTCTGGGCAAGAAGCACAGAATTACTGCTGAGATTTTGTTCTCCAAATGACAAGAAGTCCTTCTGTTCA
ATTAAAGGGGAATGGAATGTTGTCATGTATGCAAAATATGCAATGGGGGGAAATGCAATTTTTATAGATACTAAGAAGTT
GCCTATAATCAAGGAGAAAGTGAGAAAGTTGGGAGATCAGAATGAGTGTGAATCTCGCTGCCTTTGGAAGGATGTCACTT
CCAACTTAAAAATCAGAGATGGTGATGCAGCAACTGAAGCCAAGCATAGTCTTGAAAAAAGACAAAAAGCTAAAGCCCAA
GAGAGGAAGGAGAAGGAAAGTCAATGGGACATGAAG

Alignment

ORF - retro_mluc_2149 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.88 %
• Parental protein coverage: 69.91 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  STINPVDAIYQPSPLEPVINTMPSQTVLPPEPAQLCKSEQRPSSLPVGPVLATLGHHQTPTPNSTGSGHS
          ST.NPV.AIYQPSPLEPVINTMP.QTVLPPEP.QLCKSEQ.PSSLPVGPV.ATLGHHQTPTPNSTGSGHS
Retrocopy STMNPVEAIYQPSPLEPVINTMPLQTVLPPEPRQLCKSEQHPSSLPVGPVFATLGHHQTPTPNSTGSGHS

Parental  PPSSSLTSPSHVNLSPNTV-PEFSYSSSEDEFYDADEFHQSGSSPKRLIDSSGSASVLTHSSSGNSLKRP
          PP.SSLTSPS.V.LSPNTV.PEFSYS..EDEFYD.DEFHQSGSSPK.LIDSSGSASVLTH.SSGNSL...
Retrocopy PPRSSLTSPSDVSLSPNTV<PEFSYSRGEDEFYDPDEFHQSGSSPKCLIDSSGSASVLTHNSSGNSL*YL

Parental  DTTESLNSSMSNGTSDADLFDSYDDRDDEGEAGSVEEHKSVIMHLLSQVRLGMDLTKVVLPTFILERRSL
          DT.ES.NSS..NGTSDADL..SYD.RDDEGEAG.VE.HK.VIMH.LS.VRLGMDLTKVV.PTFILERRS.
Retrocopy DTAESINSSLFNGTSDADLLNSYDERDDEGEAGQVEKHKGVIMHFLSHVRLGMDLTKVVHPTFILERRSF

Parental  LEMYADFFAHP-DLFVSISDQKDARDRMVQVVKWYLSAFHAGRRGSVAKKPYNPILGEIFQCHWTLPNDT
          .......F..P.DLFVSISDQKDARD..VQVVKWYLSAFHAGRRGSVAKKPYNPILGE.FQCHWTLPNDT
Retrocopy RNV-CRLFCTP>DLFVSISDQKDARD*VVQVVKWYLSAFHAGRRGSVAKKPYNPILGEAFQCHWTLPNDT

Parental  EENTELVSEGPVPGVSKNSVTFVAEQVSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQG
          EE.TELVSEGPVPG.SKNSVTFVAEQVSH.PPISAFYAECF.KKIQ..AHIWTKSKFLGMSIGVH.IGQG
Retrocopy EEDTELVSEGPVPGGSKNSVTFVAEQVSHPPPISAFYAECFKKKIQVSAHIWTKSKFLGMSIGVHSIGQG

Parental  CVSCLDHDEHYILTFPNGYGRSILTVPWVELGGECNINCSK-TGYSANIVFHTKPF--YGGKKHRITAEI
          CVSCLD.D.H.I.TFP.GYGRS.LTVPWVELGGECNINC.K.TGY.AN.VFH.K................
Retrocopy CVSCLDRDNHNIFTFPSGYGRSVLTVPWVELGGECNINCYK<TGYRANTVFHVKSL*DFWARSTELLLRF

Parental  FSPNDKKSFCSIEGEWNGVMYVKYATGENAVFIDTKKLPIIKKKVRKLEDQNEYESRCLWKDVTFNLKIR
          .SPNDKKSFCSI.GEWN.VMY.KYA.G.NA.FIDTKKLPIIK.KVRKL.DQNE.ESRCLWKDVT.NLKIR
Retrocopy CSPNDKKSFCSIKGEWNVVMYAKYAMGGNAIFIDTKKLPIIKEKVRKLGDQNECESRCLWKDVTSNLKIR

Parental  DIDAATEAKHRLEERQRAEARERKEKEIQWETR
          D.DAATEAKH.LE.RQ.A.A.ERKEKE.QW...
Retrocopy DGDAATEAKHSLEKRQKAKAQERKEKESQWDMK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2149 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000021574	1 retrocopy	retro_cjac_1235,
Felis catus	ENSFCAG00000010298	1 retrocopy	retro_fcat_1134,
Gorilla gorilla	ENSGGOG00000004787	1 retrocopy	retro_ggor_737,
Microcebus murinus	ENSMICG00000002731	1 retrocopy	retro_mmur_1035,
Myotis lucifugus	ENSMLUG00000009199	1 retrocopy	retro_mluc_2149 ,
Nomascus leucogenys	ENSNLEG00000016138	2 retrocopies	retro_nleu_1820, retro_nleu_279,
Oryctolagus cuniculus	ENSOCUG00000004303	1 retrocopy	retro_ocun_281,
Pongo abelii	ENSPPYG00000001358	2 retrocopies	retro_pabe_689, retro_pabe_787,
Pan troglodytes	ENSPTRG00000000730	1 retrocopy	retro_ptro_632,
Ictidomys tridecemlineatus	ENSSTOG00000000692	1 retrocopy	retro_itri_1537,