RetrogeneDB ID:

retro_mluc_2105

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430037:362137..362534(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000006504
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_2105
ATTATGTGTTCTGGACCATTAATGGAGCCTGAAATCAAAATTCAGATAGCATTGTCTTTGCAGAAAATCTTAGTCAACAT
TTTTAAGGTGTCCAAAGAGGTGACATTGTGATGGCAAAAAGCCCAAGTGATCCAAAATCAAATATTTGTAAAAGATTAAA
TGGTTTGGAAAGAGACAAAATCCTTATCAATATAGTCCATCAGATTTCTTTAAAAGTCATATTATGTGCCAACAGATCAT
ATTTGGTTAGAAGGTAACAACTTAAAGAATTCTACAATTCCAGGTACTGTGGACCTATTCCACATGGCCTAATAAGAGGA
CATACTTCTTTGAGATTTGGCCTCAGAGTGATTTTGAATTTCTACATGAAAACCCTAATGGCCACAGATTTTCTGAT

ORF - retro_mluc_2105 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.88 %
Parental protein coverage: 79.52 %
Number of stop codons detected: 2
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalVMCSGPSMEPTI-QNAD-IVFAENLSRHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKMLTSS-SSS
.MCSGP.MEP.I.QN.D.IVFAENLS.HF.G.QRGDIV.AKSPSDPKSNICKR..GLE.DK.L....S..
RetrocopyIMCSGPLMEPEI<QNSDSIVFAENLSQHF*GVQRGDIVMAKSPSDPKSNICKRLNGLERDKILINI>SIR
ParentalFFKSHSYVPMGHVWLEGDNLQNST-DSRSYGPIPYGLIRGR-IFFKIWPLSDFGFLRDSPNGHRFSD
F.....YVP..H.WLEG.NL.NST..SR..GPIP.GLIRG...FF.IWP.SDF.FL...PNGHRFSD
RetrocopyFL*KSYYVPTDHIWLEGNNLKNST<NSRYCGPIPHGLIRGH<YFFEIWPQSDFEFLHENPNGHRFSD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.