RetrogeneDB ID: retro_mluc_2097

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430031:59866..60367(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WSB2
• Ensembl ID: ENSMLUG00000002114
• Aliases: None
• Description: None

Sequence

>retro_mluc_2097
GTGGAGGAGCAGTTCATCCCTAAAGGGTTTGAAGCCAAAAGCTGAAGCAGCAAAAATGATACAAAAGGGCGAGGCAGCCC
AAAGGAAAGGATTCTAGACATGTGGGCACATTGTCTGGGGTTTGCCCTTCAGCCTGTGGCCTGCTCCCCCAGCAGGAAGC
TCTGGGCATGCCACCATTCCCCGGTGCCAGGCGTCTCTTGCCTGATCCTCCCTATGGGACTCAAGGATGGGCAGATCCAG
ATTTGGGAGGTGCAGACAGGGATCCTCCTTTTGAAACTTTCCGGCCACCAAAATGTTGTAAGAGATCTGAGCTTCACACC
CAGTGGCCGTTTAACTTTGGTCTCTGTGTCTCGGAATAAGACTCTTCGCATCTGGGACCTGAATAAGCAGGGTAAACAGA
TTCAGGTGTTGTCGGGCCATCTGCAGTGGGTTTACTGCTGCTCCATCTCCGCGGACTGAAGCATGCTTCGCTCTGCAGAT
GGAGAAAAGTCAGTCTTCCTA

Alignment

ORF - retro_mluc_2097 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.07 %
• Parental protein coverage: 74.22 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LEEQFIPKGFEAKSRSSKNDTKGRGSPKEKTLD-CGQIVWGLAFSPWPSPP-SRKLWARHHPPGPDASCL
          .EEQFIPKGFEAKS.SSKNDTKGRGSPKE..LD.CG.IVWGL.FS.WP.PP.SRKLWA.HH.P.P..SCL
Retrocopy VEEQFIPKGFEAKS*SSKNDTKGRGSPKERILD>CGHIVWGLPFSLWPAPP<SRKLWACHHSPVPGVSCL

Parental  ILATGLNDGQIKIWEVQTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLS
          IL..GL.DGQI.IWEVQTG.LLL.LSGHQ.VVRDLSFTPSG.L.LVS.SR.KTLRIWDLNK.GKQIQVLS
Retrocopy ILPMGLKDGQIQIWEVQTGILLLKLSGHQNVVRDLSFTPSGRLTLVSVSRNKTLRIWDLNKQGKQIQVLS

Parental  GHLQWVYCCSISPDCSMLCSAAGEKSVSL
          GHLQWVYCCSIS.D.SML.SA.GEKSV.L
Retrocopy GHLQWVYCCSISAD*SMLRSADGEKSVFL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2097 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003651	1 retrocopy	retro_chof_870,
Echinops telfairi	ENSETEG00000018534	2 retrocopies	retro_etel_1750, retro_etel_2174,
Microcebus murinus	ENSMICG00000005913	1 retrocopy	retro_mmur_1573,
Myotis lucifugus	ENSMLUG00000002114	1 retrocopy	retro_mluc_2097 ,
Macaca mulatta	ENSMMUG00000010236	1 retrocopy	retro_mmul_1466,
Mus musculus	ENSMUSG00000029364	1 retrocopy	retro_mmus_810,