RetrogeneDB ID: retro_mluc_2092

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430026:1412682..1413020(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: QDPR
• Ensembl ID: ENSMLUG00000003473
• Aliases: None
• Description: None

Sequence

>retro_mluc_2092
GTGGCCAGCATGGAAGTGGTGGAGAAGGAAGAGGCCAGCGCCAGTGTCGTGGTTAGAATGACAAACTCGTTTACTCAGCA
AGCTGACCAGGTGACCACTGAGGTTGGAAAGCTCCTGGGTGAAGAGAAGGTGGACCAATCCTTTGTGTGGCTGGAGGCTG
GGCTGGGGGCAATGCCAAGTTCAAGTCTCTCTTTAAAAACTGCGACCTCATGTAGAAGCAGAGCATGTGGGCGTCCACCA
TCTCCAGCCACCTGGCCACCAAGCACCTCAAGGAAGGAGGCCTCCTGACCTTGGCGGGTGCCAAGGCCGCCCTGGACAGG
AGTCCTGGGATGATTGGG

Alignment

ORF - retro_mluc_2092 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.84 %
• Parental protein coverage: 54.07 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VASIDVVENEEASASVVVRMTDSFTEQADQVTADVGKLLGEEKVDA-ILCVAGGWAGGNAKSKSLFKNCD
          VAS..VVE.EEASASVVVRMT.SFT.QADQVT..VGKLLGEEKVD..ILCVAGGWAGGNAK.KSLFKNCD
Retrocopy VASMEVVEKEEASASVVVRMTNSFTQQADQVTTEVGKLLGEEKVDQ<ILCVAGGWAGGNAKFKSLFKNCD

Parental  LMWKQSMWTSTISSHLATKHLKDGGLLTLAGAKAALDGTPGMIG
          LM.KQSMW.STISSHLATKHLK.GGLLTLAGAKAALD..PGMIG
Retrocopy LM*KQSMWASTISSHLATKHLKEGGLLTLAGAKAALDRSPGMIG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2092 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000002897	1 retrocopy	retro_meug_462,
Myotis lucifugus	ENSMLUG00000003473	1 retrocopy	retro_mluc_2092 ,
Monodelphis domestica	ENSMODG00000000879	1 retrocopy	retro_mdom_844,
Rattus norvegicus	ENSRNOG00000003253	1 retrocopy	retro_rnor_2542,
Tarsius syrichta	ENSTSYG00000002627	2 retrocopies	retro_tsyr_1237, retro_tsyr_1696,