RetrogeneDB ID: retro_mluc_209

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430234:395342..396923(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023058
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000013128
• Aliases: None
• Description: None

Sequence

>retro_mluc_209
ACCGTTACTGTTTCAGATCCCGGGGTTCTAACTGTTACTAAACCTTCAGAAATCTACCCCGGAGGAGCCGATCTTCTAGT
TATAGCGGTCGCCATGGATGAGATGAAGATCAAAGGGCGGCTGCAAGTGACACTCAGAGGGGGCCCAAGCATGCACAAGA
CCAACAGTTCCCCCGAACAGATAGGACCAGATGAGAGCGGCTGCGGAGGTGGCAGTGACCTTGGAGAGGCCCCTACCCGT
GCCGCCCCTGGGGAACTTCATTCTGCGTGGGTACCGCTCAGCGCTGCGCCAGAGGCGGTACAGCGGGACTTGCAGATGGG
GCCTGAGGGGGAAAGGGACCAGGCTTCAGACACATCCTGGGGTGAGGTACTGTCACCAGGGAGGGTGCGCAAGCACACCC
ATCCCCTGAGCAAGATCTTCACTGAGGACATCAGCGGGCGCCTGTCGCTGGCAGCTGGTAGCCGGCTGCCCGAGGGCTGC
CTGGAGAAGCTGGCCCTCAACAGACCCATCTTCAACAAGCCGCTCAGCCACCTCCTCCACCATGTCAGCCTGTCCGAGAT
TGGCTTTGAGAAGCTGGAGTCCTACGTCAAGCTGGACAAGCTGAGTGAGGGGACCCATACCACCGTTTACAGAGGCAGAA
GCAAGCTCACAGACAGCCTCGTGGCACTCAAGGAGATCAGACTGGAACAGGGGGAGGGGGCACCCTGCACTGCCATCTGG
GAAGTGTGCCTGCTCAGGGACCTCAGGCATGCCAACGTCGTCACGCTGCATGACGTCATCTTCATGGAGCAGTCCCTCAT
CCTGGTCTTTGAGTGCCTGGACAAGGACCTGAAGCAGTACCTGGATGACTGCGGGAATGTCATCAACATGAACAACGTGA
AACTGTTCCTGTTCCAGCTGCTCCGGGGCCTGGCCTACTGCCACCGGAAGAAGGTGCTGCACCGAGACCTCAACCCCCAG
AACTTGCTCATCAACGAGAGAGGAGAGCTCAAGCTGGCCGACTTCGGCCTGGCCCGGACCAAGTCAATCCTAATGAAGAC
CTACTCCAACCAGGTGATAAGCCTGTGGTACCGGCCCCCCGACCTCCTGCTCGGCTGCACGCACTACTCCACCCACATTG
ACATGTGGGGCGTGGGCTGCATTTTCTACGAGATGGCCACGGGCCGGGCCCTCTTCCCAGGCTCCTCAGTGGAGGAGCAG
CTGCACCTCATCTTCCACATCTTGGGAACCCCAACTGAGGAGACATGGCCGGGCATCCTGTCCAATGAAGAGTTCAAGGC
ACGCAATTTTCCCCAGTACCGTGCCATGGCCTTTTTGAGCCTTGCGCCCCGACTTGACAGGGAGGGGGCTGATCTCCTCA
CCAAGCTGCTGCAGTACGAAGGCCGCAGTCGGATTTCCGCAGAGGATGCCATGAAGCACCCGTTCTTCTTCAGTCTTGGA
AAGCAGATCCACAAACTTCCTGACACGACTTCCATATTTGCACTAAAGGAGATCCAGCTACAAAGGGAGGCCAGCCTGCG
TTCCTCAACAATGCCTGACTCAGGCAGGCCGGCTTTCCGTGTGGCGGGCACCCAGTTCTAA

Alignment

ORF - retro_mluc_209 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.25 %
• Parental protein coverage: 74.13 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DLKMGSDGESDQASATSSDEVQSPVRVRMRNHPPRKISTEDINKRLSLPADIRLPEGYLEKLTLNSPIFD
          DL.MG..GE.DQAS.TS..EV.SP.RVR...HP..KI.TEDI..RLSL.A..RLPEG.LEKL.LN.PIF.
Retrocopy DLQMGPEGERDQASDTSWGEVLSPGRVRKHTHPLSKIFTEDISGRLSLAAGSRLPEGCLEKLALNRPIFN

Parental  KPLSRRLRRVSLSEIGFGKLETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREV
          KPLS..L..VSLSEIGF.KLE.Y.KLDKL.EGT..TVY.G.SKLTD.LVALKEIRLE..EGAPCTAI.EV
Retrocopy KPLSHLLHHVSLSEIGFEKLESYVKLDKLSEGTHTTVYRGRSKLTDSLVALKEIRLEQGEGAPCTAIWEV

Parental  SLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKV
          .LL.DL.HAN.VTLHD.I..E.SL.LVFE.LDKDLKQYLDDCGN.INM.NVKLFLFQLLRGLAYCHR.KV
Retrocopy CLLRDLRHANVVTLHDVIFMEQSLILVFECLDKDLKQYLDDCGNVINMNNVKLFLFQLLRGLAYCHRKKV

Parental  LHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIF
          LHRDL.PQNLLINERGELKLADFGLAR.KSI..KTYSN.V..LWYRPPD.LLG.T.YST.IDMWGVGCIF
Retrocopy LHRDLNPQNLLINERGELKLADFGLARTKSILMKTYSNQVISLWYRPPDLLLGCTHYSTHIDMWGVGCIF

Parental  YEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTHNYPKYRAEALLSHAPRLDSDGADL
          YEMATGR.LFPGS.VEEQLH.IF.ILGTPTEETWPGILSNEEFK..N.P.YRA.A.LS.APRLD..GADL
Retrocopy YEMATGRALFPGSSVEEQLHLIFHILGTPTEETWPGILSNEEFKARNFPQYRAMAFLSLAPRLDREGADL

Parental  LTKLLQFEGRNRISAEDAMKHPFFLSLGERIHKLPDTTSIFALKEIQLQKEANLRSSSMPDSGRPAFRVV
          LTKLLQ.EGR.RISAEDAMKHPFF.SLG..IHKLPDTTSIFALKEIQLQ.EA.LRSS.MPDSGRPAFRV.
Retrocopy LTKLLQYEGRSRISAEDAMKHPFFFSLGKQIHKLPDTTSIFALKEIQLQREASLRSSTMPDSGRPAFRVA

Parental  DTEF
          .T.F
Retrocopy GTQF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_209 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000012261	1 retrocopy	retro_cjac_961,
Dipodomys ordii	ENSDORG00000002798	1 retrocopy	retro_dord_501,
Echinops telfairi	ENSETEG00000003242	1 retrocopy	retro_etel_2002,
Myotis lucifugus	ENSMLUG00000013128	1 retrocopy	retro_mluc_209 ,
Myotis lucifugus	ENSMLUG00000023651	2 retrocopies	retro_mluc_1137, retro_mluc_354,