RetrogeneDB ID:

retro_mluc_2038

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429998:1306239..1306615(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS15A
Ensembl ID:ENSMLUG00000005660
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_2038
ATGATGCTCATGAATGTCCTGGCTGAGGCTCTCAATAATACCGAAAAGAGAGGCAAATGCCAGTTTAGTAGGCCATGCTC
CAAAGTCATCCTCTGGTTCCTAACTGTAATGATAAAGCATGGTTACATCGGCAAGTTTGAAATTATTGATGATCACAGAG
CAGAGAGAATTGTTATGAACCTCATGGTCAGGTTAAACAAATGTGGAGTATTAGCCTGACATTTGATGTGCAACTCAAAG
ATCTATGAAAGTGGTGGAACAATCTGCTCCCAGCTGTTAGATAGGTTTCATTATACTTACAAGTTCAGCAGGCATCATGG
AGCATGAAGAAGCAAGGTGAAAACACACAGGAGGGAAAATCCTGGGATTCTCTTTT

ORF - retro_mluc_2038 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.48 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLN
M..MNVLA.AL...NN.EKRGK.Q...RPCSKVI..FLTVM.KHGYIG.FEIIDDHRA..IV.NL..RLN
RetrocopyMMLMNVLAEAL---NNTEKRGKCQ-FSRPCSKVILWFLTVMIKHGYIGKFEIIDDHRAERIVMNLMVRLN
ParentalKCGV-ISPRFDVQLKDLEKWQNNLLPSRQ-FGFIVLTTSAGIMDHEEARRKHTGGKILGFFF
KCGV.IS..FDVQLKDL.KW.NNLLP.....GFI.LT.SAGIM.HEEAR.KHTGGKILGF.F
RetrocopyKCGV<ISLTFDVQLKDL*KWWNNLLPAVR<IGFIILTSSAGIMEHEEAR*KHTGGKILGFSF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.