RetrogeneDB ID: retro_mluc_2037

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429997:2001002..2002094(-)
• Located in intron of: ENSMLUG00000030076

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EZR
• Ensembl ID: ENSMLUG00000001931
• Aliases: None
• Description: None

Sequence

>retro_mluc_2037
CTGGAGTTCGCCATCCAGCCAGACACACCAGGAAAGCTGCTTTTTGATCAGGTGGTTAAGACAATCAGCCTTTGGGAAGT
GTGGTGCTTCGGCCTCCAGTGTGTAGATAATAAAGGATTTCCCACCTGGTTGAAACTTGATAAAAAGGTGTTGGCCCAGG
AGGTCAGGAAGGAGAATCCCCTGCAGTTCAAGTTCAGGGCCAAGTTCTGCCCCGAGGACGTGCCTGAGGAGCTCATCCAG
GACATTACGCAGAAGCTTTTCTTCCTCCACGTGAAGGAGGGCATTCTGAGCGATGAGATTTACTGCCCTCCTGAGACTGT
GGTGCTCCTTGGCTCCTACGCCATGCAGGCCAAGTTTGGAGACCATAACAAAGAAATTCACAAGTATGGGTACCTCAGCT
CCGAGCGGCTGATCCCCCAGAAAGTCATTGAGCAGCACAAGCTCACCAGGGACCAGTGGGAGGACCGGATCCAGGTATGG
CACATGGGGCACCGCGGGATGCTCAAAGTTAGTGCCATGCTGGAGTGCCTGAAGATTGCCCAGGACCTGGAAATGTACAG
AATCAACTATTTTGAGATTAAAAAAAATAAGAACGGAACTGACTGTGGCTTGTAGTGGATGCCCTGGGACTAAATATTTA
TGAGAAAGTTGATAATTTGACCCCAAAGATTGGCTTCCCGTGGAGTGAGATCAGGAACATCCATTTCAATGACAAGAACT
TTGTCATCAAGCCCATCGACAAGAAGGCGCCTGACTTCGTCTTCTATGCCCCCCGCCTGCACATCAACAAGCGGATCCTG
CAGCTCCACCTGGGGAACCACGAGCTATACATGTGCTGCAAAAAGCCCGACAACATCGAGGTGCAGCAGATGAAGGCCCA
GGCCCGCAAGGAGAAGCACCAGAAGCAGCTGGAGCAGCAGCAGCTGGAAACTAAGAAGAAGAGGCGAGAGACTGTGGAGA
GAAAAGGAGCAGATGATGCAGGAGAAGGAGGAGCTGATGCTGAGGCTCCAGGACTATGAGCAGAAGACCAAGAAGGCCAA
GAAAGAGCTCTCGGACCAGATCCAGAGGGCCCTGCAGCTGGAGGAGGAGCGG

Alignment

ORF - retro_mluc_2037 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.55 %
• Parental protein coverage: 76.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LEFAIQPNTTGKQLFDQVVKTIGLREVWYFGLQYVDNKGFPTWLKLDKKVSAQEVRKENPLQFKFRAKFY
          LEFAIQP.T.GK.LFDQVVKTI.L.EVW.FGLQ.VDNKGFPTWLKLDKKV.AQEVRKENPLQFKFRAKF.
Retrocopy LEFAIQPDTPGKLLFDQVVKTISLWEVWCFGLQCVDNKGFPTWLKLDKKVLAQEVRKENPLQFKFRAKFC

Parental  PEDVPEELIQDITQKLFFLQVKEGILSDEIYCPPETAVLLGSYAVQAKFGDYNKEMHKSGYLSSERLIPQ
          PEDVPEELIQDITQKLFFL.VKEGILSDEIYCPPET.VLLGSYA.QAKFGD.NKE.HK.GYLSSERLIPQ
Retrocopy PEDVPEELIQDITQKLFFLHVKEGILSDEIYCPPETVVLLGSYAMQAKFGDHNKEIHKYGYLSSERLIPQ

Parental  RVMDQHKLTRDQWEDRIQVWHAENRGCSTNRDSAMLEYLKIAQDLEMYGINYFEI-KNKKGTD-LWLGVD
          .V..QHKLTRDQWEDRIQVWH...RG......SAMLE.LKIAQDLEMY.INYFEI...K.GTD.LWL.VD
Retrocopy KVIEQHKLTRDQWEDRIQVWHMGHRGML--KVSAMLECLKIAQDLEMYRINYFEIXXXKNGTD<LWLVVD

Parental  ALGLNIYEKEDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILQLCMGNHELY
          ALGLNIYEK.D.LTPKIGFPWSEIRNI.FNDK.FVIKPIDKKAPDFVFYAPRL.INKRILQL..GNHELY
Retrocopy ALGLNIYEKVDNLTPKIGFPWSEIRNIHFNDKNFVIKPIDKKAPDFVFYAPRLHINKRILQLHLGNHELY

Parental  MRRRKPDTIEVQQMKAQAREEKHQKQLERQQLETEKKRRETVER-EKEQMMREKEELMLRLQDYEQKTKK
          M...KPD.IEVQQMKAQAR.EKHQKQLE.QQLET.KKRRETVER.....M..EKEELMLRLQDYEQKTKK
Retrocopy MCCKKPDNIEVQQMKAQARKEKHQKQLEQQQLETKKKRRETVER>KEQMM-QEKEELMLRLQDYEQKTKK

Parental  AEKELSDQIQRALQLEEER
          A.KELSDQIQRALQLEEER
Retrocopy AKKELSDQIQRALQLEEER

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2037 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000013301	1 retrocopy	retro_ggor_690,
Myotis lucifugus	ENSMLUG00000001931	3 retrocopies	retro_mluc_2037 , retro_mluc_358, retro_mluc_469,
Monodelphis domestica	ENSMODG00000007642	1 retrocopy	retro_mdom_78,