RetrogeneDB ID: retro_mluc_2036

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429997:1476018..1476448(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000025554
• Aliases: None
• Description: None

Sequence

>retro_mluc_2036
CATGTTCGAAAAGCCACCAAGTATCTGAAGGAGGCCCCTTTAAAGAAGCAGTGTGCGCCATTCTGTCATTACAGTATGGA
GCTGGTAGGTGTGCCCAGGTGAACGTGGGCTGGACACAGGGTCGGTGGCCCAAAAGGAGTGCTGAGTGTTTGCTGCGCGT
GCTTGAAAACGCCGAGAGCAATGCTGAACGTCAGGGTTTAGATGAGACTCTCTGGTGGTTGAGCACATTCAGGTGAACAA
AGCTCCCAAGATGCAACATAGAACCTACACTGCCCTTGGGCAGATTGACCCGTCCACGAGCTCTCCCTGCCACACTGAGC
TGCTCCTCACTGAAAAGGAGCCGTTTGTTCCTAAACCAGAAGAGGAGGGTGCACAGAAGAAAAAGATATCCCAGAGGAAA
CTGAAGAAACAAAAACTGATGGCCCGGGAG

Alignment

ORF - retro_mluc_2036 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.79 %
• Parental protein coverage: 77.54 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  HIRKATKYLKDVTLKKQCVPFRRYNG-GVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLD
          H.RKATKYLK...LKKQC.PF..Y...G.GRCAQ....GWTQGRWPK.SAE.LL..L.NAESNAE..GLD
Retrocopy HVRKATKYLKEAPLKKQCAPFCHYSM<GAGRCAQVNV-GWTQGRWPKRSAECLLRVLENAESNAERQGLD

Parental  V-DSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKK
          ..DSLV.EHIQVNKAPKM..RTY.A.G.I.P..SSPCH.E..LTEKE..VPKPEEE.AQKKKISQ.KLKK
Retrocopy E<DSLVVEHIQVNKAPKMQHRTYTALGQIDPSTSSPCHTELLLTEKEPFVPKPEEEGAQKKKISQRKLKK

Parental  QKLMARE
          QKLMARE
Retrocopy QKLMARE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2036 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 24 parental genes, and 598 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000022902	5 retrocopies	retro_btau_164, retro_btau_221, retro_btau_4, retro_btau_50, retro_btau_75,
Choloepus hoffmanni	ENSCHOG00000007872	50 retrocopies	retro_chof_1020, retro_chof_1021, retro_chof_107, retro_chof_1232, retro_chof_130, retro_chof_137, retro_chof_1405, retro_chof_1432, retro_chof_1448, retro_chof_1453, retro_chof_1471, retro_chof_1475, retro_chof_153, retro_chof_1634, retro_chof_1671, retro_chof_1678, retro_chof_1754, retro_chof_1786, retro_chof_187, retro_chof_1871, retro_chof_1895, retro_chof_1901, retro_chof_1908, retro_chof_2038, retro_chof_204, retro_chof_2133, retro_chof_2140,