RetrogeneDB ID:

retro_mluc_2031

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429994:62167..62894(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000016343
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_2031
AACTCCAAGCTGCTTATCACCACAGCTGGGGCACGTCAACACAAGGGAGAAAGCCGTCATAATTTGGTCCAGTGTAATGT
GAACATCTTTAACCTCTTCATTCCTAATGTGAAATACACCCCAACTGCAATTTGCTTGTTGTTTCCAACCCAGTGGGTAT
CGTGACCTATGTGGCTTGGAAGATAAGTGGCTTTCTAAAAACCCATTTATTCGAAGTGGTTGCAATCTGGATCCAGCCTG
GTTCCATTACCTAATGGGGGAGAGGCTGGGAGTTCACCCATTAAGCTGTCATGGGTGGGTGCTTGGGGAGCATGGACATT
CTAGTGACCCTGTGTGGAGTGGAGTGAATGTTGCTGGTGTCTCCCCAAAGGATCTGCACCCTGATTTAGGCAGTGATGCA
GATGAGGAACAGTGGAAGGAAGTTCACAAACAGGTGGTTGAAAGTGCCTATGATGTGATCAAACTGAAAGGCGACACACC
CTGGGCCACTGGCCCGTCAGTGGCAGATTTGGCAGGAAGTATGATGAAGAATCGTAGGCGGGTGCATCCAATTTCCACCA
TGGTTAAGAGTCTCCACGGAATAAAAGAAGACGTCCTCCTTAGTGCTCCTTCCTCTTGGGACAGAGTGGAACCTCTGATG
TTGTGAAGGTGACTCTGACACCTGAGGAAGAGCCCGTTTGAAGAAGAGAGCAGATAATTTTGGGGGATCCAGAAAGAGCT
ACAGTTT

ORF - retro_mluc_2031 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78. %
Parental protein coverage: 67.87 %
Number of stop codons detected: 0
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalNSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP-NCKLLVVSNPVDILTYVAWKLSGF-PK
NSKL.I.TAGARQ..GESR.NLVQ.NVNIF...IPNV.KY.P.NC.LLVVSNPV.I.TYVAWK.SGF..K
RetrocopyNSKLLITTAGARQHKGESRHNLVQCNVNIFNLFIPNV-KYTP<NCNLLVVSNPVGIVTYVAWKISGF<SK
ParentalNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKNLHPDLGTDADKE
N..I.SGCNLD.A.F.YLMGERLGVHPLSCHGWVLGEHG.SS.PVWSGVNVAGVS.K.LHPDLG.DAD.E
RetrocopyNPFIRSGCNLDPAWFHYLMGERLGVHPLSCHGWVLGEHGHSSDPVWSGVNVAGVSPKDLHPDLGSDADEE
ParentalQWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESMMKNLRRVHPISTMIKGLYGIKDDVFLSVPC-I
QWK.VHKQVV.SAY.VIKLKG.T.WA.G.SVADLA.SMMKN.RRVHPISTM.K.L.GIK.DV.LS.P...
RetrocopyQWKEVHKQVVESAYDVIKLKGDTPWATGPSVADLAGSMMKNRRRVHPISTMVKSLHGIKEDVLLSAPS<L
ParentalLGQNGISDVVKVTLTPEEE-ARLKKSADT-LWGIQKELQF
LGQ.G.SDVVKVTLTPEEE.ARLKK.AD...WGIQKELQF
RetrocopyLGQSGTSDVVKVTLTPEEE<ARLKKRADN<FWGIQKELQF