RetrogeneDB ID:

retro_mluc_2003

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429982:1487691..1488251(+)
Located in intron of:ENSMLUG00000003236
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000029264
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_2003
CCTTTGAAAATTGTTTTCTAGTCACTTGACCCAGAAAACACCACAAAATCTTGCAAATCAAGAGGCTCAAATCTTCATGT
TCACTTTAAGAACACTCATGAGACTGCCCAGACCATCAAGGGTATGCATATTTGAAAAGCCACCAAGTATCTGAGGGATG
TCACTTTACAGCTGCAGTGTGTGCCATTCCGTCGTTAAAATGGTGGAGTGGGTTGGTGTGCCCAGGCAGAACAGTGGGGC
TCGACGCAGGGTTGGTGGCCCAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGACAGCAATGCTGAACTT
AAGGGTTTAGATGTAGATTCTTTAGTCATTGAGCACATCCAGGTGAAAAAAGCTCCCAAGATGCAGCGTAGAATTTACAG
AGCTCATGGGCGGGTTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTCACTGAAAAAGAGCACATTGTTT
GTAAACCAGAAGAGGAGGTTGCACAGAAGAAAAAGACATCCCAGAAGAAGCTGAAGAAACAAAAAATTATGGTCCCGGAG

ORF - retro_mluc_2003 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.11 %
Parental protein coverage: 100. %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalPLKMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGV
PLK.V..SLDPEN.TKSCKSRGSNL.VHFKNT.ETAQ.IKGMHI.KATKYL.DVTL..QCVPFRR.NGGV
RetrocopyPLKIVF*SLDPENTTKSCKSRGSNLHVHFKNTHETAQTIKGMHI*KATKYLRDVTLQLQCVPFRR*NGGV
ParentalGRCAQAKQWGWTQGRWPK-KSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRI
G.CAQA.QWG.TQG.WPK.KSAEFLLHMLKNA.SNAELKGLDVDSLVIEHIQV.KAPKM.RR.YRAHGR.
RetrocopyGWCAQAEQWGSTQGWWPK<KSAEFLLHMLKNADSNAELKGLDVDSLVIEHIQVKKAPKMQRRIYRAHGRV
ParentalNPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE
NPYMSSPCHIEMILTEKE.IV.KPEEEVAQKKK.SQKKLKKQK.M..E
RetrocopyNPYMSSPCHIEMILTEKEHIVCKPEEEVAQKKKTSQKKLKKQKIMVPE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide