RetrogeneDB ID: retro_mluc_2000

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429981:1969667..1970117(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RPL7
• Ensembl ID: ENSMLUG00000028550
• Aliases: None
• Description: None

Sequence

>retro_mluc_2000
AATGGTGTGAGCCCAAAGGTCCGAAAGGTGCTGCAGCTTCTTTGCCTTTGCCAGATCTTCAACGGCACCTTTGTTAAGCT
CAACAAGGCTTCCATTAACATGCTGAGGATTGTGGAGCCATACATTGCTTGAGGGTACCCAAACCCGAAGTCAGTAAGTG
AATTGATCTACAAGCGTGGTTATGGCAAAATCAACAAAAAATGAATTGCCCTGACAGATAACTCATTGATTGCTCGATCT
CTTGTTAACTATGGCATCATCTGCTTGGAAGATCTGATTCATGAGATCTACACTGTTGGAAAGTGCTTCAAAGAAGTGAA
CAACTTCCTGTGGCCCTTCAAGTTATCTTCTTCACGAGGTGGGATGAAGAAGAAGACCACCCATTTTGTAGAATGTAGAG
ATGCTGGGAACAGGGAAGACCAGATCAATAGGCTTATTAGAAGGATGAAC

Alignment

ORF - retro_mluc_2000 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.33 %
• Parental protein coverage: 62.82 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIA
          NGVSPKVRKVLQLL.L.QIFNGTFVKLNKASINMLRIVEPYIA.GYPN.KSV.ELIYKRGYGKINKK.IA
Retrocopy NGVSPKVRKVLQLLCLCQIFNGTFVKLNKASINMLRIVEPYIA*GYPNPKSVSELIYKRGYGKINKK*IA

Parental  LTDNSLIARSLGKYGIICMEDLIH---TVGKRFKEVNNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNRED
          LTDNSLIARSL..YGIIC.EDLIH...TVGK.FKEVNNFLWPFKLSS.RGGMKKKTTHFVE..DAGNRED
Retrocopy LTDNSLIARSLVNYGIICLEDLIHEIYTVGKCFKEVNNFLWPFKLSSSRGGMKKKTTHFVECRDAGNRED

Parental  QINRLIRRMN
          QINRLIRRMN
Retrocopy QINRLIRRMN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2000 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 11 parental genes, and 72 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000020139	22 retrocopies	retro_btau_1088, retro_btau_1231, retro_btau_1367, retro_btau_1381, retro_btau_1422, retro_btau_1434, retro_btau_1468, retro_btau_1548, retro_btau_1559, retro_btau_1616, retro_btau_1627, retro_btau_1784, retro_btau_1814, retro_btau_304, retro_btau_426, retro_btau_622, retro_btau_668, retro_btau_730, retro_btau_750, retro_btau_758, retro_btau_863, retro_btau_879,
Callithrix jacchus	ENSCJAG00000007686	1 retrocopy	retro_cjac_105,
Equus caballus	ENSECAG00000009188	1 retrocopy	retro_ecab_35,
Latimeria chalumnae	ENSLACG00000003571	1 retrocopy	retro_lcha_63,
Macropus eugenii	ENSMEUG00000016319	9 retrocopies	retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Myotis lucifugus	ENSMLUG00000028550	3 retrocopies	retro_mluc_1478, retro_mluc_2000 , retro_mluc_640,
Macaca mulatta	ENSMMUG00000005141	1 retrocopy	retro_mmul_129,
Monodelphis domestica	ENSMODG00000007136	4 retrocopies	retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Otolemur garnettii	ENSOGAG00000003903	2 retrocopies	retro_ogar_15, retro_ogar_225,
Rattus norvegicus	ENSRNOG00000006992	27 retrocopies	retro_rnor_1018, retro_rnor_1174, retro_rnor_1222, retro_rnor_1233, retro_rnor_1307, retro_rnor_1388, retro_rnor_1466, retro_rnor_1580, retro_rnor_1745, retro_rnor_1916, retro_rnor_1944, retro_rnor_2025, retro_rnor_2028, retro_rnor_2100, retro_rnor_2247, retro_rnor_2304, retro_rnor_2347, retro_rnor_2531, retro_rnor_2715, retro_rnor_2765, retro_rnor_2814, retro_rnor_2824, retro_rnor_530, retro_rnor_666, retro_rnor_911, retro_rnor_929, retro_rnor_977,
Tupaia belangeri	ENSTBEG00000002301	1 retrocopy	retro_tbel_2042,