RetrogeneDB ID: retro_mluc_1974

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429971:2078857..2079371(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023799
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: C7ORF42
• Ensembl ID: ENSMLUG00000000616
• Aliases: None
• Description: None

Sequence

>retro_mluc_1974
GACATCAAACCCCTGGAGAACCTGACGCTGCCTTCAGCAGTCGGCCTCCCCTGCTGGTCTTTATAACCAGTGTAAGCGCC
CTGGCAATAGCTTTCCTGACCTTGGGCTATTTCTTCAAAATCAAGATTAAGTCACCAGGAATAGCAGAGGACGGGAATAC
TTTTCTGCTGCTGTTTAATGACTTGGACTTGTGTGTATCAGAGAATGAAACGTTAAAGCATCTCACAAATGACACCATGA
CTCCGGAAATCACAGTGACCAGTGGGCAGGCAAAGTGTCCACCCCATCGCCACAGGCACTGGGGGATTCAGGCCCTGTTA
ACATCTCAGGTACAATCACCCTCACCCTGTTCCCACTCACACCCTTTGGAGGGTACTCTTGTAATGTCACTCATCTGTAC
TCGACCATCTTAGGGCATCAGATTGGACACTCACGCAGGGAAGCCCACGAAGAGATAAACACTACCTTTACCCTGCCAGC
TGCTTGGCATGCGGATGACTGTGCCCTTCAGTCA

Alignment

ORF - retro_mluc_1974 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.29 %
• Parental protein coverage: 55.1 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  NINPLENLKL-YISSRPPLVVFMISVSAMAIAFLTLGYFFKIKEIKSPGMAEDWNTFLLRFNDLDLCVSE
          .I.PLENL.L...SSRPPL.VF..SVSA.AIAFLTLGYFFKIK.IKSPG.AED.NTFLL.FNDLDLCVSE
Retrocopy DIKPLENLTL<AFSSRPPLLVFITSVSALAIAFLTLGYFFKIK-IKSPGIAEDGNTFLLLFNDLDLCVSE

Parental  NETLKHLTNDTTTPESTMTSGQAR-VSTQSPQALEDSGPVNISVAITLTLDPLKPFGGYSRNVTHLYSTI
          NETLKHLTNDT.TPE.T.TSGQA..VST.SPQAL.DSGPVNIS..ITLTL.PL.PFGGYS.NVTHLYSTI
Retrocopy NETLKHLTNDTMTPEITVTSGQAK<VSTPSPQALGDSGPVNISGTITLTLFPLTPFGGYSCNVTHLYSTI

Parental  LGHQIGLSGREAHEEINITFTLPAAWSADDCALHS
          LGHQIG.S.REAHEEIN.TFTLPAAW.ADDCAL.S
Retrocopy LGHQIGHSRREAHEEINTTFTLPAAWHADDCALQS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1974 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000004278	1 retrocopy	retro_cjac_2145,
Cavia porcellus	ENSCPOG00000000830	1 retrocopy	retro_cpor_330,
Echinops telfairi	ENSETEG00000015971	1 retrocopy	retro_etel_2097,
Homo sapiens	ENSG00000106609	1 retrocopy	retro_hsap_3093,
Gorilla gorilla	ENSGGOG00000022776	1 retrocopy	retro_ggor_2124,
Myotis lucifugus	ENSMLUG00000000616	1 retrocopy	retro_mluc_1974 ,
Macaca mulatta	ENSMMUG00000015843	1 retrocopy	retro_mmul_1973,
Nomascus leucogenys	ENSNLEG00000013326	1 retrocopy	retro_nleu_2235,
Pan troglodytes	ENSPTRG00000019253	1 retrocopy	retro_ptro_2089,
Pteropus vampyrus	ENSPVAG00000002978	2 retrocopies	retro_pvam_988, retro_pvam_997,
Sorex araneus	ENSSARG00000001884	1 retrocopy	retro_sara_563,