RetrogeneDB ID:

retro_mluc_1951

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429959:2203576..2204152(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TMEM126A
Ensembl ID:ENSMLUG00000005896
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1951
ATGGAAAATCATGAATCAGATGATACTTTCAAGGAAGACCACATATTTGACATCATAAACAGAAAAATTAACCAACTTTC
AGAAGCAGAAATTGAACATGGATCAATATACATTGGACTTAATACTGCTGTCTGTGGCCTAATAGCAAAGTCTTTTTTGG
CGTCTTAAATGTGATACAGGCTCATGTGACACAGCTGCTGGTTTACCAATGGCAGTGATCCCATTTTTGACAGCAAATGT
ATCTTACAAAGGTTTTATAAGTTTACCATTGAATACAGGTGATTTGAATTGTGAAACCTGTACCATAACACCAGGTAGAT
TGGTTGGACTTGTTTTTGGTGGTCTGTACCCTGTTTTCTTTCCTGTGAGTGGTGGCCTGGCAGCCAGGTATGCCTCAGCC
CTGCTACTAGAGAGAGGAAACATCTTAACCTACTGGATCAGAATTTCTAAACCTATCTTTAGAAAGATGTTATTTCCCAT
TTTGCTCCAGACTGGGTTTTCAGCATATCTTAGTTCTAGACAATATAAACTACTTGTAAAGGCTCTTCAGTTACATGAAC
TGGCTTAAAACTTCAG

ORF - retro_mluc_1951 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.38 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMENHESDDTFKKEHILDIINRKINQLPEAERNLLEHGSTYIGLNAALCGLIANSL-FRRVLNVTQARIAA
MENHESDDTFK..HI.DIINRKINQL.EAE....EHGS.YIGLN.A.CGLIA.S...R..........AA
RetrocopyMENHESDDTFKEDHIFDIINRKINQLSEAE---IEHGSIYIGLNTAVCGLIAKSF>WRLKCDTGSCDTAA
ParentalGLPMAVIPFLTADISYKSVVSLPLNTGDLHCETCTTIRGGLVGLVFGGLYPVFLAIPVNGGLAARYSSAL
GLPMAVIPFLTA..SYK...SLPLNTGDL.CETCT...G.LVGLVFGGLYPVF...PV.GGLAARY.SAL
RetrocopyGLPMAVIPFLTANVSYKGFISLPLNTGDLNCETCTITPGRLVGLVFGGLYPVFF--PVSGGLAARYASAL
ParentalLPERGNILTYWIRISQPIFRKMLFPILLQTGFSAYLSSRQYKLLIKALQLPE-PGLKIQ
L.ERGNILTYWIRIS.PIFRKMLFPILLQTGFSAYLSSRQYKLL.KALQL.E..GLK.Q
RetrocopyLLERGNILTYWIRISKPIFRKMLFPILLQTGFSAYLSSRQYKLLVKALQLHE<TGLKLQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide