RetrogeneDB ID: retro_mluc_1942

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429958:1980031..1980472(+)
• Located in intron of: ENSMLUG00000000286

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000030708
• Aliases: None
• Description: None

Sequence

>retro_mluc_1942
GAAGAAAAAGTGTCCACCTCTAGCTTTGCACAGGGTATCAGCATGGAAGCCATGAGTGAGAAGAAAACGGTGCCTTCTGA
TTTTAGCATAGGACCTACAGAGAAAACTTGGAAACCTTTGTCATTTAAGGATCCCAACTTTGTGCCCTCTGGCCATGGTG
GTGTAGCTGGCAAGAACAGAACTTGGAAGAACTAACAAATTCTCATTTCTGAAAGGGCACTGCCATGGCAACTGAACAAT
CCCATCTACTTCAGTAGTGATGCTCCCCCATCCTTCAAACCAGCTAAGCATTCTGATGTTTTAGTCCTTCTTGCCAACTA
CAGTGACCCACAGAGCAATCTGCGGTTCAACACCATGAAAGACTTTCCCTGCATTCACAGGCTGCCATCCTATGTTGTCA
CTGGCTACCTGGCCCTGAGAAACACCATAAGCATCGTTCCC

Alignment

ORF - retro_mluc_1942 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.5 %
• Parental protein coverage: 78.24 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KKKVSASGFAQGISMEAMSENKMVPSDYSTGPMEKTSKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQI
          ..KVS.S.FAQGISMEAMSE.K.VPSD.S.GP.EKT.KPL.FKDPNFV.SGHGG.VAG.KNRTWKN..QI
Retrocopy EEKVSTSSFAQGISMEAMSEKKTVPSDFSIGPTEKTWKPLSFKDPNFVPSGHGG-VAG-KNRTWKN-*QI

Parental  LASERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGY
          L.SERALPWQLN.P.YFS.DAPPSFKPA.K.SDV..LLANY.DPQS.LRF.T...F..I.RLPS.VVTGY
Retrocopy LISERALPWQLNNPIYFSSDAPPSFKPA-KHSDVLVLLANYSDPQSNLRFNTMKDFPCIHRLPSYVVTGY

Parental  LALRKATSIVP
          LALR...SIVP
Retrocopy LALRNTISIVP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1942 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000017884	1 retrocopy	retro_cfam_371,
Callithrix jacchus	ENSCJAG00000021025	1 retrocopy	retro_cjac_922,
Myotis lucifugus	ENSMLUG00000030708	3 retrocopies	retro_mluc_118, retro_mluc_1892, retro_mluc_1942 ,
Macaca mulatta	ENSMMUG00000020108	1 retrocopy	retro_mmul_1340,
Mus musculus	ENSMUSG00000047989	2 retrocopies	retro_mmus_1358, retro_mmus_1410,
Ochotona princeps	ENSOPRG00000011443	1 retrocopy	retro_opri_721,
Pteropus vampyrus	ENSPVAG00000017436	1 retrocopy	retro_pvam_899,