RetrogeneDB ID: retro_mluc_1875

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429934:518993..519565(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000003114
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RAB14
• Ensembl ID: ENSMLUG00000009818
• Aliases: None
• Description: None

Sequence

>retro_mluc_1875
TACAATTTCTTGTTTAAGTTCCTGGTTATTGGAAATACAGGAACTGGCAAGTCGTGCCTGCTTCATCAGTTTATTGAAAA
AAAAAAATTCAAAGATGACTCCAATCATACCGTAGGAGTGGAATTTGGTTCAAAGATAATAAATGTTGGTGGTAAATACG
TGAAGTTGCAGATATGGGATACAGCCGGCCAAGAGCGATTCAGGTCTGTGATGACCAGAAGCTACTACAGAGGCGCCGCT
GGGGCCCTGCTCGTTTATGACATCACCAGCCGGGAATCCTACAATGCGCTTACTAATTGGTTAACAGATGCCAGAATGCT
CGCCAGTCAGAACATCGTGATCATCCTCTGTGGAACAAAATGGACCTGGACACAGACCGGGAAGTGACTTTCTTAGAAGC
CTCCAGATTTGCTCAAGAAAATGAACTGATGTTTTTGGAAACAAGTGCACTGACGGGGGAGAATGTGGAAGAGGCCTTTG
TTCAGTGTGCAAGGAAAATACTTAACAAAATCAAATCAGGTGAGCTGAACCCAGAAAAGATGGGCTCAGGCATCCAGTAT
GGAAATGCAGCC

Alignment

ORF - retro_mluc_1875 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.38 %
• Parental protein coverage: 87.91 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  YSYIFKYIIIGDMGVGKSCLLHQFTEKK-FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV
          Y...FK...IG..G.GKSCLLHQF.....F..D..HT.GVEFG..II.V.G...KLQIWDTAGQERFR.V
Retrocopy YNFLFKFLVIGNTGTGKSCLLHQFIXXXXFKDDSNHTVGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV

Parental  -TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG-NKADLEAQRDVTYEEAKQFAE
          .TRSYYRGAAGAL.VYDIT.R..YN.L..WLTDAR.L...N.VIIL.G.NK.DL...R.VT..EA..FA.
Retrocopy MTRSYYRGAAGALLVYDITSRESYNALTNWLTDARMLASQNIVIILCG<NKMDLDTDREVTFLEASRFAQ

Parental  ENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSA
          EN.L.FLE.SA.TGENVE.AF...A.KI...I..G.L......SG.Q....A
Retrocopy ENELMFLETSALTGENVEEAFVQCARKILNKIKSGELNPEKMGSGIQYGNAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1875 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003669	1 retrocopy	retro_chof_2175,
Cavia porcellus	ENSCPOG00000006688	1 retrocopy	retro_cpor_1081,
Myotis lucifugus	ENSMLUG00000001902	3 retrocopies	retro_mluc_1243, retro_mluc_1251, retro_mluc_2103,
Myotis lucifugus	ENSMLUG00000008820	2 retrocopies	retro_mluc_1606, retro_mluc_2435,
Myotis lucifugus	ENSMLUG00000009818	1 retrocopy	retro_mluc_1875 ,
Oryctolagus cuniculus	ENSOCUG00000013654	1 retrocopy	retro_ocun_1667,
Otolemur garnettii	ENSOGAG00000012973	1 retrocopy	retro_ogar_710,
Pelodiscus sinensis	ENSPSIG00000003919	1 retrocopy	retro_psin_66,
Sarcophilus harrisii	ENSSHAG00000017800	1 retrocopy	retro_shar_80,