RetrogeneDB ID: retro_mluc_1861

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429931:1278855..1279525(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: REXO2
• Ensembl ID: ENSMLUG00000009030
• Aliases: None
• Description: None

Sequence

>retro_mluc_1861
ATGCTAGGCGGCTCCCTGCGCTCCAGGCTGTTGCGAGGTGTGGGTGGGAGCCGTGGGCAGTTCGGGGCACGGGGTGTCCG
CGAAGGTGGCGCAGCCATGGCGGTGGGGGAGAGCATGGTCCAGCAGATGGTCTGGGTGGACCTGGAGATGATGGGATTGG
ACATTGAGAAGGACCAAATTATTGAGATGGCCTGTCTGATCACCAACTCTGATCTCAACATCTTGGCCGAAGGTCCTAAC
CTGATTATAAAACAGCCAGATGAGTTACTGGGACAGCATGTGAGATTGGTGCAAGAAGTATCACGGGAAGTCCAGTCTAA
CCAAAGCAGTGAAGGAGAGTACAGTGACATTGCAGCAGGCACAGTATGAATTTCTGTCCTTTGTGTGACAGCAGACTCCT
CCGCGGCTCTGTCCACTTGCAGGAAATTCAGTTCATGCAGATAAGAAGTTTCTTGACAAATACATGCCCCAGTTCATGAA
ACATCTTCATTATAGAACAATTGATGTGAGCACTGTTAAGGAACTGTGCAGACGCTGGTATCCAGAAGAATATGAATTTG
CACCCAAGAAGGCTGCTTCTCACAGGGCACTTGATGACATTAGTGAAAGCATCAGAGAACTTCAGTTTTACCGAAATAAC
ATCTTCAAGAAAAAAGCAGATGAAGAGGAA

Alignment

ORF - retro_mluc_1861 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.96 %
• Parental protein coverage: 94.09 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MLGGSLRSGLLRGVGGSRGQFGARGVREGGAAMAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACLITDS
          MLGGSLRS.LLRGVGGSRGQFGARGVREGGAAMA.GESM.Q.MVWVDLEM.GLDIEKDQIIEMACLIT.S
Retrocopy MLGGSLRSRLLRGVGGSRGQFGARGVREGGAAMAVGESMVQQMVWVDLEMMGLDIEKDQIIEMACLITNS

Parental  DLNILAEGPNLIIKQPDELL-DSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPL
          DLNILAEGPNLIIKQPDELL.DSM.DWCK..HGKS.LTKAVKESTVTLQQA.YEFLSFV.QQTPP.LCPL
Retrocopy DLNILAEGPNLIIKQPDELL>DSM*DWCKKYHGKSSLTKAVKESTVTLQQAQYEFLSFV*QQTPPRLCPL

Parental  AGNSVHADKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIRELQF
          AGNSVHADKKFLDKYMPQFMKHLHYR.IDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIRELQF
Retrocopy AGNSVHADKKFLDKYMPQFMKHLHYRTIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIRELQF

Parental  YRNNIFKKKTDEKK
          YRNNIFKKK.DE..
Retrocopy YRNNIFKKKADEEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1861 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000013497	1 retrocopy	retro_chof_40,
Callithrix jacchus	ENSCJAG00000012434	1 retrocopy	retro_cjac_1493,
Dipodomys ordii	ENSDORG00000011255	1 retrocopy	retro_dord_374,
Equus caballus	ENSECAG00000005988	1 retrocopy	retro_ecab_572,
Myotis lucifugus	ENSMLUG00000009030	1 retrocopy	retro_mluc_1861 ,
Monodelphis domestica	ENSMODG00000013913	1 retrocopy	retro_mdom_1575,
Tarsius syrichta	ENSTSYG00000002237	1 retrocopy	retro_tsyr_1177,