RetrogeneDB ID:

retro_mluc_1839

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429926:1594417..1594816(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SYCP3
Ensembl ID:ENSMLUG00000010711
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1839
TTTGAAGCTGACATTAACAAGGCTCTTCTTACAAAGGGAAAAATCTAGAAATGTATACCAGGGCTTTTCTCAAAAATGTA
ACCAGAAAGTTTATCATATTTGGAAAGATCAACAAGATCAAAGGCAGTAACTTAACCAAGAATCTTCTCAGCAGATTCTG
ACTTTGATTCAGCAGTGGGAGATAATGTACAGAAAGCTGAGAAACAAGAAGATAAACTAGCTAATTTATTTGTATAGCAA
CAAAAGGTTTTCTAACAATCTAGAGTTGTTCAGAGCCAAAGATGGAAAACAATTAAACAGCTGTATGAGCAGTTCACAAA
GAGCAGGGAGGACTTGGAGAAGAATCATGATACTCTACTCACTGATGCACAACATGAACTTAGAAAAGAAATGGCTGTT

ORF - retro_mluc_1839 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 64.23 %
Parental protein coverage: 60.91 %
Number of stop codons detected: 3
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalFASNISNALNTKKK-RLALYTKISLKT-SNQKIEHIWKTQQEQRQKLSQEYSQQFLTLFQQWET-DIQNA
F...I..AL.TK.K..L..YT...LK...NQK..HIWK.QQ.QRQ.L.QE.SQQ.LTL.QQWE....Q.A
RetrocopyFEADINKALLTKGK<NLEMYTRAFLKN<CNQKVYHIWKDQQDQRQ*LNQESSQQILTLIQQWEI<NVQKA
ParentalKKQEEKLANLFQQQQQFFQQSRLGQSQRLKTIKQLYEQFIKSMEDLEKNSDTLVTDAQNELKNEMAM
.KQE.KLANLF..QQ..F.QSR..QSQR.KTIKQLYEQF.KS.EDLEKN.DTL.TDAQ.EL..EMA.
RetrocopyEKQEDKLANLFV*QQKVF*QSRVVQSQRWKTIKQLYEQFTKSREDLEKNHDTLLTDAQHELRKEMAV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.