RetrogeneDB ID: retro_mluc_1835

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429925:1517389..1517725(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000013438
• Aliases: None
• Description: None

Sequence

>retro_mluc_1835
ATGGGCAAAGGAACCCTGTGCCCCTACTCTCCTTTCTGCTCCTTCCCCAGAGATGTGCTATGGGTGGTACTATGGGCACT
GGTATCCTCTCTCTTCTTTCATGTCCCCGCTGGATTACTGGCCCTCCTCACCCCTGGGCATCGCAAATATGGTAGGTTCA
TGTCTGTAAGCATCCTGTTGATGAGCTTCATGGGACCAATTGCTGCTGGAATCCGAAGTGCAGTAATTGCTGGAGCGAAC
CGAGCAACAGGAAAGGAAATGATACCCTTTGAAGCCCTTGCCTGGGGCACTGGACACACGTTTTGTGTAGCGGTAGTCTC
CCTTTTACGGGTTTTA

Alignment

ORF - retro_mluc_1835 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.42 %
• Parental protein coverage: 79.17 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VGNGTLCPNATSLCTFPEMWYGVFLWALVSSLFFHVPAGLLALFTLRHHKYGRFMSVGILLMGIVGPITA
          .G.GTLCP.....C.FP.....V.LWALVSSLFFHVPAGLLAL.T..H.KYGRFMSV.ILLM...GPI.A
Retrocopy MGKGTLCPYSP-FCSFPRDVLWVVLWALVSSLFFHVPAGLLALLTPGHRKYGRFMSVSILLMSFMGPIAA

Parental  GILTSAAIAGVYRAAGKDMIPFEALTLGTGQTFCVVVVSFLRIL
          GI..SA.IAG..RA.GK.MIPFEAL..GTG.TFCV.VVS.LR.L
Retrocopy GI-RSAVIAGANRATGKEMIPFEALAWGTGHTFCVAVVSLLRVL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1835 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000013438	1 retrocopy	retro_mluc_1835 ,
Otolemur garnettii	ENSOGAG00000000791	1 retrocopy	retro_ogar_2969,