RetrogeneDB ID: retro_mluc_1814

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429917:538709..539274(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SSBP2
• Ensembl ID: ENSMLUG00000001897
• Aliases: None
• Description: None

Sequence

>retro_mluc_1814
CTATCTAACCAGGCACTTGGAGGGGTCCCAGGAAGTCAGCTATCACATCCCAATAGAATGGGCCCAAATGGACAACAAGG
ACCTCCAAATACGGGTGGACCAATGCCCAGAATGGCACCTCCAAGAGGAATGGTGCCCTTAGACCACAAAACTATGGAGG
TGCAATGAGACACCTACTGAATGTTTTAGGTGGCCCTGGAATGCCTAGAATGAACATGGGTCCAGGTGGTGACAGACCTT
GGCCAAACCCAACAAATGCCGATTCAGTACCATACTCCTCAGCATCTCCTAGGAACTATGTAGATCCCCTGGGATATGGA
GGGCCACCAGGAACACCCATCATCCTAGTCCAGCAGATTCAACCAACTCTGCAGACAACATGTATACATGAATGAATGCA
GAACCTGCTAGACCTAACAAGCCTAATTTTCCAATGGGCCCTGGTTCAGATGGACCCATGGGTGGAATGGAGTCGCATCA
CATGAATGGCTCTTTAGGCCCAGGAGGTATGGACAGTATTTCCAAGTTCTCTCCTACTTGGAATAGCATGACAATGAGTG
TGCAA

Alignment

ORF - retro_mluc_1814 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.77 %
• Parental protein coverage: 52.63 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  IPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLG-PQNYGGAMRPPLNALGGPGMP
          ..NQALGGVPGSQ...P..M.P..QQG.PN.GGPM.RM.PPRGMVPL..PQNYGGAMR..LN.LGGPGMP
Retrocopy LSNQALGGVPGSQLSHPNRMGPNGQQGPPNTGGPMPRMAPPRGMVPLD<PQNYGGAMRHLLNVLGGPGMP

Parental  GMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIM-PSPADSTNSGDNMYTLMNAVPPG
          .MNMGPGG.RPWPNPTNA.S.PYSSASP.NYV.P.G.GGPPGTPI..PSPADSTNS.DNMYT.MNA.P..
Retrocopy RMNMGPGGDRPWPNPTNADSVPYSSASPRNYVDPLGYGGPPGTPII<PSPADSTNSADNMYT*MNAEPAR

Parental  PNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSP--NNMSLSNQ
          PN.PNFPMGPGSDGPMGG...MESHHMNGSLG.G.MDSISK.SP..N.M..S.Q
Retrocopy PNKPNFPMGPGSDGPMGG---MESHHMNGSLGPGGMDSISKFSPTWNSMTMSVQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1814 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000001897	1 retrocopy	retro_mluc_1814 ,
Macaca mulatta	ENSMMUG00000017583	1 retrocopy	retro_mmul_1768,