RetrogeneDB ID:

retro_mluc_1796

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429912:896377..897125(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000023208
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:EIF3E
Ensembl ID:ENSMLUG00000007269
Aliases:None
Description:Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:G1P8X3]


Retrocopy-Parental alignment summary:






>retro_mluc_1796
GAGATCATAGATAATAATTCTGTGAGTTCTCCACTCCAGTCTCTTCAGCAGCGACCATGGTGCATTCACTGGTCTCTGTC
TTCTTCAATCACCCCAAAGGGTGTGATAACATTATTGATCTCTTCCTTTACCAGCCACAGTATCTTAATGCAGTTCAGAT
GATGTGTCTACATATTCTTCACTACTTGACTACAGCAGTCATAACAAACAAAGATATTCGAAAACGCCAGCAGGCACTGA
AAGATCTAGTCAAAGTTATTCAATGGGATTCTTACACATACAAAGACCCAATTGCCGAGTTTGTTGAATGCTTAGATGTT
CACTTTTACTTTGATGGGGCTCAGAAAAAGCGGAGGGAATGTGAACCTGTGCTTGTAAATGACTTCCTGGTGGCTTGTCT
CGAGGGTTTCGCTGAAAATTCCCATCTCTTCCTATTTGAGACTTCTAGTTGCATCCACCATGTATCAGCATTAACATGTT
GGCAGATAAACGGAGCGTGACTCCAGATGCAGCTGAAAGGTGGATTGTAAATTTGGTTAGAAATGCAAGACTAGACGCCA
AGATCGATTCTAAATTAGGTCACGTGGTTATGGGTAACAGTGCAATCTTAACCTATCAGCCAGTAAATGAAAACACCAAA
AGCCTTTCATTTAGAAGCCAGATGTTGACTTTTAATATTTAGATGTAACTTAATCAGAATAGTAGGTTAGGGGCTCCTAA
CAGGGCAACTGAAGACTCTGGCTTTTAC

ORF - retro_mluc_1796 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.38 %
Parental protein coverage: 56.63 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKG-RDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVI
E.IDNNSVSSPLQSLQQR.W.IHWSL......PKG..DNIIDLFLYQPQYLNA.Q.MC.HIL.YLTTAVI
RetrocopyEIIDNNSVSSPLQSLQQRPWCIHWSLSSSIT-PKG<CDNIIDLFLYQPQYLNAVQMMCLHILHYLTTAVI
ParentalTNKDVRKRRQVLKELVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDF
TNKD.RKR.Q.LK.LVKVIQ..SYTYKDPI.EFVECL.V.F.FDGAQKK.RECE.VLVND.FLVACLE.F
RetrocopyTNKDIRKRQQALKDLVKVIQWDSYTYKDPIAEFVECLDVHFYFDGAQKKRRECEPVLVND-FLVACLEGF
ParentalIENARLFIFETFCRIHQ-CISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPY
.EN..LF.FET...IH..CISINMLADK...TP..AERWIVNL.RNARLDAKIDSKLGHVVMGN.A...Y
RetrocopyAENSHLFLFETSSCIHH<CISINMLADKRSVTPDAAERWIVNLVRNARLDAKIDSKLGHVVMGNSAILTY
ParentalQQVIEKTKSLSFRSQMLAMNIEKKLNQNSRSEAPNWATQDSGFY
Q.V.E.TKSLSFRSQML..NI...LNQNSR..APN.AT.DSGFY
RetrocopyQPVNENTKSLSFRSQMLTFNI*M*LNQNSRLGAPNRATEDSGFY