RetrogeneDB ID: retro_mluc_178

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430129:833340..834150(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000002169
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000009265
• Aliases: None
• Description: None

Sequence

>retro_mluc_178
ATGGCGGCCGCCTCCCTGGGCGAAAAGGAGAAGGAGCGGGTGGGCGGCGGGTCGGGGGCGGCGTGCGGCAAGAGCACGCG
AGAGCGGCTGCTGTCTGTGCTGGACGACCTGGAGGTCCTGTCCAGAGAGCTCATAGAAATGCTGGCAATTTCAAGAAACC
AAAAGTTGTTACAGGCTGGAGAAGAAAACCAGGTGCTGGAGTTATTGATTCACAGAGATGGGGAGTTTCAGGAACTCATG
AAATTGGCACTTAATCAGGGAAAAATTCACCATGAAATGCAAGTTTTAGAACAAGAAGTTGAGAAGAGAGACAGTGATAT
TCGGCGGTTACAAAAACAGCTAAAGGAAGCTGAACAAATACTGGCAACAGCTGTTTACCAAGCAAAAGAAAAACTGAAAT
CAATAGATACGGCAAGAAAAGGTGCTATCTCCTCTGAAGAAATAATTAAGTATGCACATAGGATTAGTGCAAGTCATGCT
GTGTGTGCCCCAACGACCTGGGTTCCAGGGGACCCACGGAGACCATACCCAAGGGATTTAGAGATGAGAAGTGGATTATT
GGGTCAAATGAACAATCCTTCCACTAATGGTGTGAATGGCCCTTTACCTGGAGATGCACTTGCAGCAGGCAGATTGCCAG
ATGTCCTGGCTCCACAGTATCCCCGGCAATCAAATGACATGGCAATGAATATGTTACCACCAAATCACAGTAATGACTTT
TTGTTGAAACCTCCAGGGCATAAGAAAGAAAATGAAGATGATGTAGAGTTTATGTCAACAGACTCCTCTAGCAGTAGTGA
CTCTGATTAA

Alignment

ORF - retro_mluc_178 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.74 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LSLSFRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLALNQGKIHHEMQVLEKEVEKRDSD
          L....RELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLALNQGKIHHEMQVLE.EVEKRDSD
Retrocopy LEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLALNQGKIHHEMQVLEQEVEKRDSD

Parental  IQQLQKQLKEAEQILATAVYQAKEKLKSIDKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPY
          I..LQKQLKEAEQILATAVYQAKEKLKSID.ARKGAISSEEIIKYAHRISAS.AVCAP.TWVPGDPRRPY
Retrocopy IRRLQKQLKEAEQILATAVYQAKEKLKSIDTARKGAISSEEIIKYAHRISASHAVCAPTTWVPGDPRRPY

Parental  PTDLEMRSGLLGQMNNPSTNGVNGHLPGDALAAGRLPDVLAPQYPWQSNDMAMNMLPPNHSNDFLLEPPG
          P.DLEMRSGLLGQMNNPSTNGVNG.LPGDALAAGRLPDVLAPQYP.QSNDMAMNMLPPNHSNDFLL.PPG
Retrocopy PRDLEMRSGLLGQMNNPSTNGVNGPLPGDALAAGRLPDVLAPQYPRQSNDMAMNMLPPNHSNDFLLKPPG

Parental  HNKENEDDVEVMSTDSSSSSSDSD
          H.KENEDDVE.MSTD.SSSSSDSD
Retrocopy HKKENEDDVEFMSTD-SSSSSDSD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_178 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003718	1 retrocopy	retro_amel_1882,
Canis familiaris	ENSCAFG00000004451	1 retrocopy	retro_cfam_1792,
Callithrix jacchus	ENSCJAG00000009256	1 retrocopy	retro_cjac_3937,
Dasypus novemcinctus	ENSDNOG00000018064	1 retrocopy	retro_dnov_1342,
Myotis lucifugus	ENSMLUG00000009265	1 retrocopy	retro_mluc_178 ,
Mustela putorius furo	ENSMPUG00000001437	1 retrocopy	retro_mputfur_162,
Mus musculus	ENSMUSG00000022109	1 retrocopy	retro_mmus_3576,
Sorex araneus	ENSSARG00000001473	1 retrocopy	retro_sara_353,
Tupaia belangeri	ENSTBEG00000014259	1 retrocopy	retro_tbel_292,