RetrogeneDB ID: retro_mluc_1779

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429907:2551677..2552156(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000008749
• Aliases: None
• Description: None

Sequence

>retro_mluc_1779
CAGTCAGATCAGATACTGATTCATCAGCAAGTTGAGCTTCTGGAAGTCTTAACAAGTTTTAGATCTAGTATTAAATATAA
AAAGAAGGACAGCCTTAGACAAACTATTTACTTTGCAGTGGAGGATAGTGATTTCTGTACCTGAAACTGCTATGGGACTT
TTAAGTCTTTTACTGTTAAGGATTCTTGATAACAGGAGCCAAGAGGTCATAACTCTGGAGATACCACGGAGGTATGCCAG
CTGTAGTTGCCCCTGCTGCCCTCAAGAGATAGAAATCCTCACTCCTCCTGATACACCAGCAGGTTATGTTTCTCAGAATT
GGTACCCATGCCAGCCAAAGTTTACAGTTCAAAATGAAGAGGAGAGAGGATGTACTAAAAATTATTGGTCCATGTTGTGG
TGATATTGATTTTGAGATTAAATCTCTTGATGAAGAAAATGTGGTTGGCAAGATTCCCAAGCAATAGACTGGTTTTGTG

Alignment

ORF - retro_mluc_1779 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.28 %
• Parental protein coverage: 50.77 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QIDQILIHQQVELLEVLIGFETNNKYEIKNSLGQRIYFAVEDTDCCTRNCCGANRPFT-MRILDLMGREV
          Q.DQILIHQQVELLEVL..F....KY..K.SL.Q.IYFAVED.D.CT.NC.G....FT..RILD....EV
Retrocopy QSDQILIHQQVELLEVLTSFRSSIKYKKKDSLRQTIYFAVEDSDFCT*NCYGTFKSFT>LRILDNRSQEV

Parental  ITLERPLRCTSCCCPCCLQEIEIYAPPGVPVGYVIQNWHPCLPKLTIQNE-RREDVLKIIGPCLVCGCCA
          ITLE.P.R..SC.CPCC.QEIEI..PP..P.GYV.QNW.PC.PK.T.QNE.RREDVLKIIGPC..CG...
Retrocopy ITLEIPRRYASCSCPCCPQEIEILTPPDTPAGYVSQNWYPCQPKFTVQNE>RREDVLKIIGPC--CG---

Parental  DVDFEIKSLDEENVVGKISKQWTGFV
          D.DFEIKSLDEENVVGKI.KQ.TGFV
Retrocopy DIDFEIKSLDEENVVGKIPKQ*TGFV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1779 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000027005	1 retrocopy	retro_fcat_797,
Myotis lucifugus	ENSMLUG00000008749	1 retrocopy	retro_mluc_1779 ,
Monodelphis domestica	ENSMODG00000021248	2 retrocopies	retro_mdom_1443, retro_mdom_1597,
Mus musculus	ENSMUSG00000032369	1 retrocopy	retro_mmus_462,
Rattus norvegicus	ENSRNOG00000033412	1 retrocopy	retro_rnor_1962,