RetrogeneDB ID: retro_mluc_176

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430342:138694..139810(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027833
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: GTF2A1
• Ensembl ID: ENSMLUG00000017256
• Aliases: None
• Description: None

Sequence

>retro_mluc_176
ATGGCGAACTTGGCAAATACAAACACCGTGTCTAAAGTGTCTAAATTATACAGCTCCGTGATCGAAGATGTTATTAATGA
TGTGAGAGACATCTTTTTGGATGATGGAGTCGATGAGCAAGTTCTGATGGAACTAAAAACTCTATGGGAGAATAAACTAA
TGCAGTCTAGGGCGCTCGATAGATGTCCTTCAGAAGAGCAGCAGCTCCTATTGCAAGTTCAACAGCAGCAGCAGCATCAC
CAGCAGCAGCAGCAGCAGCAGCAGCGAGCTCAACCACAGCCTACAGCACCTCCTCGAGCGCAGACTCCGCGGGTCCTTAT
TCCTGCAGCACCACAAGTTATTGCTCCTGGTGCTCAGCTGATACAGCGTATGAAGGCATCAAACACGAGTGCTGCTGCTA
CCGCTGCCACCTTAGCACTCCCTGCAGGGGTGACTCCTGTCCAACAGATATTGACAAATTCAGGCCAGCTTCTTCAAGTG
GTCAGAGCCGCCAATGGCGCTCGGTATATTGTTCAGCCTCAGCAGCCCGTGGTTCTACAACAACAGGTTATACCACCAAT
GCAGCCTGGTGGAGGACAGGCTCTTGTCATAAAACAGGTTTTGGCCCCTCTTCCTGGAGGGACTTCAGCACCGACAGGTG
TCAGCATCCAGCCCCAGCAAATCTTATTTACAGGAAATCAGACTCAAGTCATACCTACAACGGCGGCGGCACCTACACCA
GCAGCGGCGCAGGTAACTACGACTGGCCCACAGCGACCACAGGCCCGGCCTGCCCAACAACGGGCCCCGCTGGTATTGCA
AGTCGATGGAACTGGGGATACGTCATCGGAAGAAGATGAAGATGAGGAAGAAGACGATGATGACGATGAGGAGGAAGACA
AAGAGGAAGATGGAGCGGAAGGTGGGCAGGTAGCAGAGGAGCCCCTCAATAGTGAAGATGATCTGAGCGATGAGGAAGGA
CAGGAAGTCTTTGATACTGAACATGTGGTTGTGTGCCAATTTGAGAAGGTATTCAGAAATAAAAACAAATGGAGATTTCT
ACTCAAGGACGGCATTATGAATCTCAATGGAAGAGATTATATATTTGCCAAAGCCGTCGGAGATGCAGAATGGTGA

Alignment

ORF - retro_mluc_176 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.97 %
• Parental protein coverage: 81.05 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QQQHQTQQQQHHHHHHHQQAQPQPTVPQQAQTQQVLIPASQQAAAPQVIVPDSKLIQHMNASNMVRSAAA
          .QQ...Q.QQ...HH..QQ.Q.Q...PQ.........P.....AAPQVI.P...LIQ.M.ASN...SAAA
Retrocopy EQQLLLQVQQQQQHHQQQQQQQQRAQPQPTAPPRAQTPRVLIPAAPQVIAPGAQLIQRMKASNT--SAAA

Parental  TAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQPQQSVVLQQQVIPQMQPGGVQAPVIQQVLAP
          TAATLALPAGVTPVQQILTNSGQLLQVVRAANGA.YI.QPQQ.VVLQQQVIP.MQPGG.QA.VI.QVLAP
Retrocopy TAATLALPAGVTPVQQILTNSGQLLQVVRAANGARYIVQPQQPVVLQQQVIPPMQPGGGQALVIKQVLAP

Parental  LPGGISPQTGVIIQPQQILFTGNKTQVIPTTVAAPTPAQAQITATGQQQPQAQPAQQQAPLVLQVDGTGD
          LPGG.S..TGV.IQPQQILFTGN.TQVIPTT.AAPTPA.AQ.T.TG.Q.PQA.PAQQ.APLVLQVDGTGD
Retrocopy LPGGTSAPTGVSIQPQQILFTGNQTQVIPTTAAAPTPAAAQVTTTGPQRPQARPAQQRAPLVLQVDGTGD

Parental  TSSEEDEDEEEDYDDDEEEDKEKDGAEDGQVEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNK
          TSSEEDEDEEED.DDDEEEDKE.DGAE.GQV.EEPLNSEDD.SDEEGQE.FDTE.VVVCQ..K..R.KNK
Retrocopy TSSEEDEDEEEDDDDDEEEDKEEDGAEGGQVAEEPLNSEDDLSDEEGQEVFDTEHVVVCQFEKVFRNKNK

Parental  WKFHLKDGIMNLNGRDYIFSKAIGDAEW
          W.F.LKDGIMNLNGRDYIF.KA.GDAEW
Retrocopy WRFLLKDGIMNLNGRDYIFAKAVGDAEW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_176 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000017256	1 retrocopy	retro_mluc_176 ,
Mus musculus	ENSMUSG00000020962	2 retrocopies	retro_mmus_62, retro_mmus_760,