RetrogeneDB ID: retro_mluc_1684

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429885:1281701..1282664(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNF149
• Ensembl ID: ENSMLUG00000007110
• Aliases: None
• Description: None

Sequence

>retro_mluc_1684
TTCAGTGACAGCTCCCCCAAGAGGGCGCGCTGGGCCTAGTGGGCTTCCCGCGTGCCAGGGACAACCCTACGGGTTGCACG
CCCAACACGCACTTCGTGGTGCCAGCGCCGGGCGGCCGTGGAGCCGTGCTCTGGGTTGCCCTGGTGGCACGTGGGGGCTG
CACGTTCAAGGACAAGGTGTTGGTGACGGCATGGAGACACGCCTCGGCCGGCCATGGTGACTTATAAAGAGGAGCGCCAC
AGGAACCTCACCGCGCCCATGTCCCATGTGGGGACAGGAAATATAGGTCATTATGGTTAGCTACTCAAAAGGCAAAGAAG
TTTTGGATCTGATACAAAAAGAAATTCAAGTCAAAATGACCGTAGGGGTTGGGACTCGCCATGGTCAGGAGTTTATCAGT
GGCCAGTCAGGGGTATTTGTGACCTTTGCCTTCATCACACGATGATCATCTCATTAGTGCGGCTAATATTTTACTATATA
CAGCGTTTCCTTTATACTGGCTCACAGTTTGGAAGCCAGAGCCACAGAAAAGCAACAAGAAAGTTATTGGCCAGCTTTCA
CTTCACACAATAAAGCACAGAGAAAAGGGCACTGCCATGGACACTGAGAATTGCTCAGTGTGCATTGAGGATTTTAAGGT
GAAGCATGTTATCAGAAATCTGCCATGCAAGCATATTTTTCATAGAATGTGCACTGACCCATGGCTTTCTGATCACCACA
CGTGTCCAATGGGTAGCTTGATGTCATCAAAGCCCTGGATACTGGGGAGAGCTTGAGGATGCCCAGGAGGTGCCCGTTGC
TGAGGCAGCCCCAGGAGGTGCTGTGGCTTCTAGTTTCAGTGTTACTGTTCACAACAAAGACAGCAGTGTCGGGAGCCTCT
CCCCGCTGCCCTCCACCAGTGACCCTGTGCCGCAGTGCAGCGGGTATCTTAAAGAAGACTCGGGAGAAAACACAGCCTTA
CTG

Alignment

ORF - retro_mluc_1684 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.11 %
• Parental protein coverage: 95.63 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  FGDSSPK-EGALGLVGVPGARDGDPEGCAPDTRFVVPAPGGGGGGGAAPWVALVAHGGCTLKDK-VLVAA
          F.DSSPK.EGALGLVG.P.ARD..P.GC.P.T.FVVPAP...GG.GA..WVALVA.GGCT.KDK....A.
Retrocopy FSDSSPK<EGALGLVGFPRARD-NPTGCTPNTHFVVPAP---GGRGAVLWVALVARGGCTFKDKVLVTAW

Parental  RRNAS-AVVIYNEERHGNLTAPLSHAGTGNI-VVIMVSYSKGKEILDLVQKEIQVKMTIGVGTRHVQEFI
          R.....A.V.Y.EERH.NLTAP.SH.GTGNI.V...VSYSKGKE.LDL.QKEIQVKMT.GVGTRH.QEFI
Retrocopy RHASA>AMVTYKEERHRNLTAPMSHVGTGNI>VIM-VSYSKGKEVLDLIQKEIQVKMTVGVGTRHGQEFI

Parental  NGQSVVFVAIAFIT-MMIISLAWLIFYYIQRFLYTGSQFGSQSHRKET-KKVIGQLPLHTIKHGEKGIDV
          .GQS.VFV..AFIT..MIISL..LIFYYIQRFLYTGSQFGSQSHRK.T.KKVIGQL.LHTIKH.EKG...
Retrocopy SGQSGVFVTFAFIT<TMIISLVRLIFYYIQRFLYTGSQFGSQSHRKAT<KKVIGQLSLHTIKHREKGTAM

Parental  DAENCAVCIENFKVKDVIRILPCKHIFHRTCIDPWLLDHHTCPMCK-LDVIKAL-GYWGELEDAQEEPAA
          D.ENC.VCIE.FKVK.VIR.LPCKHIFHR.C.DPWL.DHHTCPM...LDVIKAL.GYWGELEDAQE.P.A
Retrocopy DTENCSVCIEDFKVKHVIRNLPCKHIFHRMCTDPWLSDHHTCPMGS<LDVIKAL<GYWGELEDAQEVPVA

Parental  EAAPGGAVAAAASVSVTVRHEDRSVGSPSPSPSTRDPGPQCSRHLKEDAGESTALL
          EAAPGGAV..A.S.SVTV...D.SVGS.SP.PST.DP.PQCS..LKED.GE.TALL
Retrocopy EAAPGGAV--ASSFSVTVHNKDSSVGSLSPLPSTSDPVPQCSGYLKEDSGENTALL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1684 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000012057	2 retrocopies	retro_chof_290, retro_chof_555,
Dasypus novemcinctus	ENSDNOG00000011956	3 retrocopies	retro_dnov_2168, retro_dnov_534, retro_dnov_580,
Macropus eugenii	ENSMEUG00000014821	1 retrocopy	retro_meug_417,
Myotis lucifugus	ENSMLUG00000007110	1 retrocopy	retro_mluc_1684 ,
Rattus norvegicus	ENSRNOG00000013946	2 retrocopies	retro_rnor_1406, retro_rnor_2527,
Tursiops truncatus	ENSTTRG00000016450	1 retrocopy	retro_ttru_351,